Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

pairaln mode does not support the binary version of the taxonomy files #53

Open
athbaltzis opened this issue Aug 11, 2022 · 5 comments
Open

pairaln mode does not support the binary version of the taxonomy files #53

athbaltzis opened this issue Aug 11, 2022 · 5 comments

Comments

@athbaltzis
Copy link

Hi guys! While trying to set up a mmseqs web server to run colabfold for a multimer, I came across the following issue that hampers the creation of the final pair.a3m alignment file:

mmseqs-web-worker_1     | pairaln /opt/mmseqs-web/jobs/qOfRdtYp0THSGaDxs9TXTh4GNdmpLvMSERS4oQ/qdb /opt/mmseqs-web/databases/uniref30_2103_db.idx /opt/mmseqs-web/jobs/qOfRdtYp0THSGaDxs9TXTh4GNdmpLvMSERS4oQ/res_exp_realign /opt/mmseqs-web/jobs/qOfRdtYp0THSGaDxs9TXTh4GNdmpLvMSERS4oQ/res_exp_realign_pair --db-load-mode 2
mmseqs-web-worker_1     |
mmseqs-web-worker_1     | Input taxonomy database "/opt/mmseqs-web/databases/uniref30_2103_db.idx" is missing files:
mmseqs-web-worker_1     | - /opt/mmseqs-web/databases/uniref30_2103_db.idx_mapping
mmseqs-web-worker_1     | - /opt/mmseqs-web/databases/uniref30_2103_db.idx_nodes.dmp
mmseqs-web-worker_1     | - /opt/mmseqs-web/databases/uniref30_2103_db.idx_names.dmp
mmseqs-web-worker_1     | - /opt/mmseqs-web/databases/uniref30_2103_db.idx_merged.dmp
mmseqs-web-worker_1     | align /opt/mmseqs-web/jobs/qOfRdtYp0THSGaDxs9TXTh4GNdmpLvMSERS4oQ/qdb /opt/mmseqs-web/databases/uniref30_2103_db.idx /opt/mmseqs-web/jobs/qOfRdtYp0THSGaDxs9TXTh4GNdmpLvMSERS4oQ/res_exp_realign_pair /opt/mmseqs-web/jobs/qOfRdtYp0THSGaDxs9TXTh4GNdmpLvMSERS4oQ/res_exp_realign_pair_bt --db-load-mode 2 -e inf -a
mmseqs-web-worker_1     |
mmseqs-web-worker_1     | Input /opt/mmseqs-web/jobs/qOfRdtYp0THSGaDxs9TXTh4GNdmpLvMSERS4oQ/res_exp_realign_pair does not exist
mmseqs-web-worker_1     | pairaln /opt/mmseqs-web/jobs/qOfRdtYp0THSGaDxs9TXTh4GNdmpLvMSERS4oQ/qdb /opt/mmseqs-web/databases/uniref30_2103_db.idx /opt/mmseqs-web/jobs/qOfRdtYp0THSGaDxs9TXTh4GNdmpLvMSERS4oQ/res_exp_realign_pair_bt /opt/mmseqs-web/jobs/qOfRdtYp0THSGaDxs9TXTh4GNdmpLvMSERS4oQ/res_final --db-load-mode 2
mmseqs-web-worker_1     |
mmseqs-web-worker_1     | Input taxonomy database "/opt/mmseqs-web/databases/uniref30_2103_db.idx" is missing files:
mmseqs-web-worker_1     | - /opt/mmseqs-web/databases/uniref30_2103_db.idx_mapping
mmseqs-web-worker_1     | - /opt/mmseqs-web/databases/uniref30_2103_db.idx_nodes.dmp
mmseqs-web-worker_1     | - /opt/mmseqs-web/databases/uniref30_2103_db.idx_names.dmp
mmseqs-web-worker_1     | - /opt/mmseqs-web/databases/uniref30_2103_db.idx_merged.dmp
mmseqs-web-worker_1     | result2msa /opt/mmseqs-web/jobs/qOfRdtYp0THSGaDxs9TXTh4GNdmpLvMSERS4oQ/qdb /opt/mmseqs-web/databases/uniref30_2103_db.idx /opt/mmseqs-web/jobs/qOfRdtYp0THSGaDxs9TXTh4GNdmpLvMSERS4oQ/res_final /opt/mmseqs-web/jobs/qOfRdtYp0THSGaDxs9TXTh4GNdmpLvMSERS4oQ/pair.a3m --db-load-mode 2 --msa-format-mode 5
mmseqs-web-worker_1     |
mmseqs-web-worker_1     | Input /opt/mmseqs-web/jobs/qOfRdtYp0THSGaDxs9TXTh4GNdmpLvMSERS4oQ/res_final does not exist

It seems that the pairaln mode of mmseqs2 does not support the binary version of the taxonomy files (uniref30_2103_db_taxonomy) and requires the taxonomy flat file databases. I use this mmseqs commit: 96b2009982ce686e0b78e226c75c59fd286ba450. Could an update to the latest version solve this issue? Is there any workaround to create the flat file databases for uniref30_2013?

Thanks in advance!
@milot-mirdita
Copy link
Member

Can you try with a newer commit? This look about right.

Can you please post a ls -lah of the databases folder?

@wosmanitx
Copy link

Hi, I am having the same problem:

[root@ip-172-31-50-187 databases]# ls -lah
total 1.6T
drwxr-xr-x 7 root     root      48K Oct 31 15:27 .
drwxr-xr-x 6 root     root      227 Oct 28 17:36 ..
-rw-r--r-- 1 root     root        0 Oct 27 05:55 COLABDB_READY
-rw-r--r-- 1 ec2-user ec2-user  52G Sep 10  2021 colabfold_envdb_202108_aln.tsv
-rw-r--r-- 1 root     root     196M Oct 27 05:15 colabfold_envdb_202108_db.0
-rw-r--r-- 1 root     root     206M Oct 27 05:15 colabfold_envdb_202108_db.1
-rw-r--r-- 1 root     root     200M Oct 27 05:15 colabfold_envdb_202108_db.10
-rw-r--r-- 1 root     root     198M Oct 27 05:15 colabfold_envdb_202108_db.100
-rw-r--r-- 1 root     root     197M Oct 27 05:15 colabfold_envdb_202108_db.101
-rw-r--r-- 1 root     root     197M Oct 27 05:15 colabfold_envdb_202108_db.102
-rw-r--r-- 1 root     root     197M Oct 27 05:15 colabfold_envdb_202108_db.103
-rw-r--r-- 1 root     root     197M Oct 27 05:15 colabfold_envdb_202108_db.104
-rw-r--r-- 1 root     root     198M Oct 27 05:15 colabfold_envdb_202108_db.105
-rw-r--r-- 1 root     root     197M Oct 27 05:15 colabfold_envdb_202108_db.106
-rw-r--r-- 1 root     root     197M Oct 27 05:15 colabfold_envdb_202108_db.107
-rw-r--r-- 1 root     root     196M Oct 27 05:15 colabfold_envdb_202108_db.108
-rw-r--r-- 1 root     root     196M Oct 27 05:15 colabfold_envdb_202108_db.109
-rw-r--r-- 1 root     root     196M Oct 27 05:15 colabfold_envdb_202108_db.11
-rw-r--r-- 1 root     root     197M Oct 27 05:15 colabfold_envdb_202108_db.110
-rw-r--r-- 1 root     root     197M Oct 27 05:15 colabfold_envdb_202108_db.111
-rw-r--r-- 1 root     root     196M Oct 27 05:15 colabfold_envdb_202108_db.112
-rw-r--r-- 1 root     root     197M Oct 27 05:15 colabfold_envdb_202108_db.113
-rw-r--r-- 1 root     root     196M Oct 27 05:15 colabfold_envdb_202108_db.114
-rw-r--r-- 1 root     root     198M Oct 27 05:15 colabfold_envdb_202108_db.115
-rw-r--r-- 1 root     root     201M Oct 27 05:15 colabfold_envdb_202108_db.116
-rw-r--r-- 1 root     root     202M Oct 27 05:15 colabfold_envdb_202108_db.117
-rw-r--r-- 1 root     root     202M Oct 27 05:15 colabfold_envdb_202108_db.118
-rw-r--r-- 1 root     root     199M Oct 27 05:15 colabfold_envdb_202108_db.119
-rw-r--r-- 1 root     root     200M Oct 27 05:15 colabfold_envdb_202108_db.12
-rw-r--r-- 1 root     root     205M Oct 27 05:15 colabfold_envdb_202108_db.120
-rw-r--r-- 1 root     root     196M Oct 27 05:15 colabfold_envdb_202108_db.121
-rw-r--r-- 1 root     root     195M Oct 27 05:15 colabfold_envdb_202108_db.122
-rw-r--r-- 1 root     root     195M Oct 27 05:15 colabfold_envdb_202108_db.123
-rw-r--r-- 1 root     root     195M Oct 27 05:15 colabfold_envdb_202108_db.124
-rw-r--r-- 1 root     root     195M Oct 27 05:15 colabfold_envdb_202108_db.125
-rw-r--r-- 1 root     root     194M Oct 27 05:15 colabfold_envdb_202108_db.126
-rw-r--r-- 1 root     root     198M Oct 27 05:15 colabfold_envdb_202108_db.127
-rw-r--r-- 1 root     root     199M Oct 27 05:15 colabfold_envdb_202108_db.13
-rw-r--r-- 1 root     root     204M Oct 27 05:15 colabfold_envdb_202108_db.14
-rw-r--r-- 1 root     root     203M Oct 27 05:15 colabfold_envdb_202108_db.15
-rw-r--r-- 1 root     root     204M Oct 27 05:15 colabfold_envdb_202108_db.16
-rw-r--r-- 1 root     root     203M Oct 27 05:15 colabfold_envdb_202108_db.17
-rw-r--r-- 1 root     root     204M Oct 27 05:15 colabfold_envdb_202108_db.18
-rw-r--r-- 1 root     root     204M Oct 27 05:15 colabfold_envdb_202108_db.19
-rw-r--r-- 1 root     root     204M Oct 27 05:15 colabfold_envdb_202108_db.2
-rw-r--r-- 1 root     root     202M Oct 27 05:15 colabfold_envdb_202108_db.20
-rw-r--r-- 1 root     root     203M Oct 27 05:15 colabfold_envdb_202108_db.21
-rw-r--r-- 1 root     root     203M Oct 27 05:15 colabfold_envdb_202108_db.22
-rw-r--r-- 1 root     root     203M Oct 27 05:15 colabfold_envdb_202108_db.23
-rw-r--r-- 1 root     root     201M Oct 27 05:15 colabfold_envdb_202108_db.24
-rw-r--r-- 1 root     root     203M Oct 27 05:15 colabfold_envdb_202108_db.25
-rw-r--r-- 1 root     root     196M Oct 27 05:15 colabfold_envdb_202108_db.26
-rw-r--r-- 1 root     root     203M Oct 27 05:15 colabfold_envdb_202108_db.27
-rw-r--r-- 1 root     root     202M Oct 27 05:15 colabfold_envdb_202108_db.28
-rw-r--r-- 1 root     root     194M Oct 27 05:15 colabfold_envdb_202108_db.29
-rw-r--r-- 1 root     root     205M Oct 27 05:15 colabfold_envdb_202108_db.3
-rw-r--r-- 1 root     root     199M Oct 27 05:15 colabfold_envdb_202108_db.30
-rw-r--r-- 1 root     root     203M Oct 27 05:15 colabfold_envdb_202108_db.31
-rw-r--r-- 1 root     root     202M Oct 27 05:15 colabfold_envdb_202108_db.32
-rw-r--r-- 1 root     root     199M Oct 27 05:15 colabfold_envdb_202108_db.33
-rw-r--r-- 1 root     root     203M Oct 27 05:15 colabfold_envdb_202108_db.34
-rw-r--r-- 1 root     root     202M Oct 27 05:15 colabfold_envdb_202108_db.35
-rw-r--r-- 1 root     root     198M Oct 27 05:15 colabfold_envdb_202108_db.36
-rw-r--r-- 1 root     root     201M Oct 27 05:15 colabfold_envdb_202108_db.37
-rw-r--r-- 1 root     root     197M Oct 27 05:15 colabfold_envdb_202108_db.38
-rw-r--r-- 1 root     root     203M Oct 27 05:15 colabfold_envdb_202108_db.39
-rw-r--r-- 1 root     root     205M Oct 27 05:15 colabfold_envdb_202108_db.4
-rw-r--r-- 1 root     root     204M Oct 27 05:15 colabfold_envdb_202108_db.40
-rw-r--r-- 1 root     root     197M Oct 27 05:15 colabfold_envdb_202108_db.41
-rw-r--r-- 1 root     root     203M Oct 27 05:15 colabfold_envdb_202108_db.42
-rw-r--r-- 1 root     root     204M Oct 27 05:15 colabfold_envdb_202108_db.43
-rw-r--r-- 1 root     root     200M Oct 27 05:15 colabfold_envdb_202108_db.44
-rw-r--r-- 1 root     root     199M Oct 27 05:15 colabfold_envdb_202108_db.45
-rw-r--r-- 1 root     root     197M Oct 27 05:15 colabfold_envdb_202108_db.46
-rw-r--r-- 1 root     root     197M Oct 27 05:15 colabfold_envdb_202108_db.47
-rw-r--r-- 1 root     root     203M Oct 27 05:15 colabfold_envdb_202108_db.48
-rw-r--r-- 1 root     root     200M Oct 27 05:15 colabfold_envdb_202108_db.49
-rw-r--r-- 1 root     root     205M Oct 27 05:15 colabfold_envdb_202108_db.5
-rw-r--r-- 1 root     root     201M Oct 27 05:15 colabfold_envdb_202108_db.50
-rw-r--r-- 1 root     root     201M Oct 27 05:15 colabfold_envdb_202108_db.51
-rw-r--r-- 1 root     root     202M Oct 27 05:15 colabfold_envdb_202108_db.52
-rw-r--r-- 1 root     root     200M Oct 27 05:15 colabfold_envdb_202108_db.53
-rw-r--r-- 1 root     root     197M Oct 27 05:15 colabfold_envdb_202108_db.54
-rw-r--r-- 1 root     root     200M Oct 27 05:15 colabfold_envdb_202108_db.55
-rw-r--r-- 1 root     root     202M Oct 27 05:15 colabfold_envdb_202108_db.56
-rw-r--r-- 1 root     root     196M Oct 27 05:15 colabfold_envdb_202108_db.57
-rw-r--r-- 1 root     root     198M Oct 27 05:15 colabfold_envdb_202108_db.58
-rw-r--r-- 1 root     root     200M Oct 27 05:15 colabfold_envdb_202108_db.59
-rw-r--r-- 1 root     root     205M Oct 27 05:15 colabfold_envdb_202108_db.6
-rw-r--r-- 1 root     root     201M Oct 27 05:15 colabfold_envdb_202108_db.60
-rw-r--r-- 1 root     root     200M Oct 27 05:15 colabfold_envdb_202108_db.61
-rw-r--r-- 1 root     root     199M Oct 27 05:15 colabfold_envdb_202108_db.62
-rw-r--r-- 1 root     root     200M Oct 27 05:15 colabfold_envdb_202108_db.63
-rw-r--r-- 1 root     root     199M Oct 27 05:15 colabfold_envdb_202108_db.64
-rw-r--r-- 1 root     root     200M Oct 27 05:15 colabfold_envdb_202108_db.65
-rw-r--r-- 1 root     root     200M Oct 27 05:15 colabfold_envdb_202108_db.66
-rw-r--r-- 1 root     root     199M Oct 27 05:15 colabfold_envdb_202108_db.67
-rw-r--r-- 1 root     root     200M Oct 27 05:15 colabfold_envdb_202108_db.68
-rw-r--r-- 1 root     root     200M Oct 27 05:15 colabfold_envdb_202108_db.69
-rw-r--r-- 1 root     root     197M Oct 27 05:15 colabfold_envdb_202108_db.7
-rw-r--r-- 1 root     root     200M Oct 27 05:15 colabfold_envdb_202108_db.70
-rw-r--r-- 1 root     root     200M Oct 27 05:15 colabfold_envdb_202108_db.71
-rw-r--r-- 1 root     root     200M Oct 27 05:15 colabfold_envdb_202108_db.72
-rw-r--r-- 1 root     root     200M Oct 27 05:15 colabfold_envdb_202108_db.73
-rw-r--r-- 1 root     root     199M Oct 27 05:15 colabfold_envdb_202108_db.74
-rw-r--r-- 1 root     root     198M Oct 27 05:15 colabfold_envdb_202108_db.75
-rw-r--r-- 1 root     root     200M Oct 27 05:15 colabfold_envdb_202108_db.76
-rw-r--r-- 1 root     root     198M Oct 27 05:15 colabfold_envdb_202108_db.77
-rw-r--r-- 1 root     root     200M Oct 27 05:15 colabfold_envdb_202108_db.78
-rw-r--r-- 1 root     root     199M Oct 27 05:15 colabfold_envdb_202108_db.79
-rw-r--r-- 1 root     root     201M Oct 27 05:15 colabfold_envdb_202108_db.8
-rw-r--r-- 1 root     root     198M Oct 27 05:15 colabfold_envdb_202108_db.80
-rw-r--r-- 1 root     root     198M Oct 27 05:15 colabfold_envdb_202108_db.81
-rw-r--r-- 1 root     root     198M Oct 27 05:15 colabfold_envdb_202108_db.82
-rw-r--r-- 1 root     root     198M Oct 27 05:15 colabfold_envdb_202108_db.83
-rw-r--r-- 1 root     root     198M Oct 27 05:15 colabfold_envdb_202108_db.84
-rw-r--r-- 1 root     root     197M Oct 27 05:15 colabfold_envdb_202108_db.85
-rw-r--r-- 1 root     root     198M Oct 27 05:15 colabfold_envdb_202108_db.86
-rw-r--r-- 1 root     root     198M Oct 27 05:15 colabfold_envdb_202108_db.87
-rw-r--r-- 1 root     root     198M Oct 27 05:15 colabfold_envdb_202108_db.88
-rw-r--r-- 1 root     root     198M Oct 27 05:15 colabfold_envdb_202108_db.89
-rw-r--r-- 1 root     root     194M Oct 27 05:15 colabfold_envdb_202108_db.9
-rw-r--r-- 1 root     root     199M Oct 27 05:15 colabfold_envdb_202108_db.90
-rw-r--r-- 1 root     root     200M Oct 27 05:15 colabfold_envdb_202108_db.91
-rw-r--r-- 1 root     root     205M Oct 27 05:15 colabfold_envdb_202108_db.92
-rw-r--r-- 1 root     root     206M Oct 27 05:15 colabfold_envdb_202108_db.93
-rw-r--r-- 1 root     root     205M Oct 27 05:15 colabfold_envdb_202108_db.94
-rw-r--r-- 1 root     root     206M Oct 27 05:15 colabfold_envdb_202108_db.95
-rw-r--r-- 1 root     root     198M Oct 27 05:15 colabfold_envdb_202108_db.96
-rw-r--r-- 1 root     root     197M Oct 27 05:15 colabfold_envdb_202108_db.97
-rw-r--r-- 1 root     root     197M Oct 27 05:15 colabfold_envdb_202108_db.98
-rw-r--r-- 1 root     root     197M Oct 27 05:15 colabfold_envdb_202108_db.99
-rw-r--r-- 1 root     root     203M Oct 27 05:30 colabfold_envdb_202108_db_aln.0
-rw-r--r-- 1 root     root     209M Oct 27 05:30 colabfold_envdb_202108_db_aln.1
-rw-r--r-- 1 root     root     196M Oct 27 05:30 colabfold_envdb_202108_db_aln.10
-rw-r--r-- 1 root     root     208M Oct 27 05:30 colabfold_envdb_202108_db_aln.100
-rw-r--r-- 1 root     root     209M Oct 27 05:30 colabfold_envdb_202108_db_aln.101
-rw-r--r-- 1 root     root     208M Oct 27 05:30 colabfold_envdb_202108_db_aln.102
-rw-r--r-- 1 root     root     209M Oct 27 05:30 colabfold_envdb_202108_db_aln.103
-rw-r--r-- 1 root     root     209M Oct 27 05:30 colabfold_envdb_202108_db_aln.104
-rw-r--r-- 1 root     root     212M Oct 27 05:30 colabfold_envdb_202108_db_aln.105
-rw-r--r-- 1 root     root     209M Oct 27 05:30 colabfold_envdb_202108_db_aln.106
-rw-r--r-- 1 root     root     209M Oct 27 05:30 colabfold_envdb_202108_db_aln.107
-rw-r--r-- 1 root     root     209M Oct 27 05:30 colabfold_envdb_202108_db_aln.108
-rw-r--r-- 1 root     root     206M Oct 27 05:30 colabfold_envdb_202108_db_aln.109
-rw-r--r-- 1 root     root     183M Oct 27 05:30 colabfold_envdb_202108_db_aln.11
-rw-r--r-- 1 root     root     209M Oct 27 05:30 colabfold_envdb_202108_db_aln.110
-rw-r--r-- 1 root     root     209M Oct 27 05:30 colabfold_envdb_202108_db_aln.111
-rw-r--r-- 1 root     root     207M Oct 27 05:30 colabfold_envdb_202108_db_aln.112
-rw-r--r-- 1 root     root     209M Oct 27 05:30 colabfold_envdb_202108_db_aln.113
-rw-r--r-- 1 root     root     207M Oct 27 05:30 colabfold_envdb_202108_db_aln.114
-rw-r--r-- 1 root     root     208M Oct 27 05:30 colabfold_envdb_202108_db_aln.115
-rw-r--r-- 1 root     root     224M Oct 27 05:30 colabfold_envdb_202108_db_aln.116
-rw-r--r-- 1 root     root     228M Oct 27 05:30 colabfold_envdb_202108_db_aln.117
-rw-r--r-- 1 root     root     230M Oct 27 05:30 colabfold_envdb_202108_db_aln.118
-rw-r--r-- 1 root     root     217M Oct 27 05:30 colabfold_envdb_202108_db_aln.119
-rw-r--r-- 1 root     root     206M Oct 27 05:30 colabfold_envdb_202108_db_aln.12
-rw-r--r-- 1 root     root     241M Oct 27 05:30 colabfold_envdb_202108_db_aln.120
-rw-r--r-- 1 root     root     210M Oct 27 05:30 colabfold_envdb_202108_db_aln.121
-rw-r--r-- 1 root     root     208M Oct 27 05:30 colabfold_envdb_202108_db_aln.122
-rw-r--r-- 1 root     root     207M Oct 27 05:30 colabfold_envdb_202108_db_aln.123
-rw-r--r-- 1 root     root     206M Oct 27 05:30 colabfold_envdb_202108_db_aln.124
-rw-r--r-- 1 root     root     208M Oct 27 05:30 colabfold_envdb_202108_db_aln.125
-rw-r--r-- 1 root     root     205M Oct 27 05:30 colabfold_envdb_202108_db_aln.126
-rw-r--r-- 1 root     root     207M Oct 27 05:30 colabfold_envdb_202108_db_aln.127
-rw-r--r-- 1 root     root     205M Oct 27 05:30 colabfold_envdb_202108_db_aln.13
-rw-r--r-- 1 root     root     209M Oct 27 05:30 colabfold_envdb_202108_db_aln.14
-rw-r--r-- 1 root     root     208M Oct 27 05:30 colabfold_envdb_202108_db_aln.15
-rw-r--r-- 1 root     root     207M Oct 27 05:30 colabfold_envdb_202108_db_aln.16
-rw-r--r-- 1 root     root     209M Oct 27 05:30 colabfold_envdb_202108_db_aln.17
-rw-r--r-- 1 root     root     211M Oct 27 05:30 colabfold_envdb_202108_db_aln.18
-rw-r--r-- 1 root     root     211M Oct 27 05:30 colabfold_envdb_202108_db_aln.19
-rw-r--r-- 1 root     root     209M Oct 27 05:30 colabfold_envdb_202108_db_aln.2
-rw-r--r-- 1 root     root     207M Oct 27 05:30 colabfold_envdb_202108_db_aln.20
-rw-r--r-- 1 root     root     210M Oct 27 05:30 colabfold_envdb_202108_db_aln.21
-rw-r--r-- 1 root     root     209M Oct 27 05:30 colabfold_envdb_202108_db_aln.22
-rw-r--r-- 1 root     root     210M Oct 27 05:30 colabfold_envdb_202108_db_aln.23
-rw-r--r-- 1 root     root     202M Oct 27 05:30 colabfold_envdb_202108_db_aln.24
-rw-r--r-- 1 root     root     210M Oct 27 05:30 colabfold_envdb_202108_db_aln.25
-rw-r--r-- 1 root     root     187M Oct 27 05:30 colabfold_envdb_202108_db_aln.26
-rw-r--r-- 1 root     root     213M Oct 27 05:30 colabfold_envdb_202108_db_aln.27
-rw-r--r-- 1 root     root     209M Oct 27 05:30 colabfold_envdb_202108_db_aln.28
-rw-r--r-- 1 root     root     184M Oct 27 05:30 colabfold_envdb_202108_db_aln.29
-rw-r--r-- 1 root     root     210M Oct 27 05:30 colabfold_envdb_202108_db_aln.3
-rw-r--r-- 1 root     root     199M Oct 27 05:30 colabfold_envdb_202108_db_aln.30
-rw-r--r-- 1 root     root     211M Oct 27 05:30 colabfold_envdb_202108_db_aln.31
-rw-r--r-- 1 root     root     209M Oct 27 05:30 colabfold_envdb_202108_db_aln.32
-rw-r--r-- 1 root     root     199M Oct 27 05:30 colabfold_envdb_202108_db_aln.33
-rw-r--r-- 1 root     root     213M Oct 27 05:30 colabfold_envdb_202108_db_aln.34
-rw-r--r-- 1 root     root     211M Oct 27 05:30 colabfold_envdb_202108_db_aln.35
-rw-r--r-- 1 root     root     195M Oct 27 05:30 colabfold_envdb_202108_db_aln.36
-rw-r--r-- 1 root     root     210M Oct 27 05:30 colabfold_envdb_202108_db_aln.37
-rw-r--r-- 1 root     root     195M Oct 27 05:30 colabfold_envdb_202108_db_aln.38
-rw-r--r-- 1 root     root     216M Oct 27 05:30 colabfold_envdb_202108_db_aln.39
-rw-r--r-- 1 root     root     208M Oct 27 05:30 colabfold_envdb_202108_db_aln.4
-rw-r--r-- 1 root     root     219M Oct 27 05:30 colabfold_envdb_202108_db_aln.40
-rw-r--r-- 1 root     root     194M Oct 27 05:30 colabfold_envdb_202108_db_aln.41
-rw-r--r-- 1 root     root     216M Oct 27 05:30 colabfold_envdb_202108_db_aln.42
-rw-r--r-- 1 root     root     220M Oct 27 05:30 colabfold_envdb_202108_db_aln.43
-rw-r--r-- 1 root     root     207M Oct 27 05:30 colabfold_envdb_202108_db_aln.44
-rw-r--r-- 1 root     root     202M Oct 27 05:30 colabfold_envdb_202108_db_aln.45
-rw-r--r-- 1 root     root     197M Oct 27 05:30 colabfold_envdb_202108_db_aln.46
-rw-r--r-- 1 root     root     200M Oct 27 05:30 colabfold_envdb_202108_db_aln.47
-rw-r--r-- 1 root     root     213M Oct 27 05:30 colabfold_envdb_202108_db_aln.48
-rw-r--r-- 1 root     root     206M Oct 27 05:30 colabfold_envdb_202108_db_aln.49
-rw-r--r-- 1 root     root     210M Oct 27 05:30 colabfold_envdb_202108_db_aln.5
-rw-r--r-- 1 root     root     211M Oct 27 05:30 colabfold_envdb_202108_db_aln.50
-rw-r--r-- 1 root     root     211M Oct 27 05:30 colabfold_envdb_202108_db_aln.51
-rw-r--r-- 1 root     root     213M Oct 27 05:30 colabfold_envdb_202108_db_aln.52
-rw-r--r-- 1 root     root     207M Oct 27 05:30 colabfold_envdb_202108_db_aln.53
-rw-r--r-- 1 root     root     199M Oct 27 05:30 colabfold_envdb_202108_db_aln.54
-rw-r--r-- 1 root     root     209M Oct 27 05:30 colabfold_envdb_202108_db_aln.55
-rw-r--r-- 1 root     root     210M Oct 27 05:30 colabfold_envdb_202108_db_aln.56
-rw-r--r-- 1 root     root     205M Oct 27 05:30 colabfold_envdb_202108_db_aln.57
-rw-r--r-- 1 root     root     209M Oct 27 05:30 colabfold_envdb_202108_db_aln.58
-rw-r--r-- 1 root     root     207M Oct 27 05:30 colabfold_envdb_202108_db_aln.59
-rw-r--r-- 1 root     root     210M Oct 27 05:30 colabfold_envdb_202108_db_aln.6
-rw-r--r-- 1 root     root     210M Oct 27 05:30 colabfold_envdb_202108_db_aln.60
-rw-r--r-- 1 root     root     210M Oct 27 05:30 colabfold_envdb_202108_db_aln.61
-rw-r--r-- 1 root     root     208M Oct 27 05:30 colabfold_envdb_202108_db_aln.62
-rw-r--r-- 1 root     root     210M Oct 27 05:30 colabfold_envdb_202108_db_aln.63
-rw-r--r-- 1 root     root     207M Oct 27 05:30 colabfold_envdb_202108_db_aln.64
-rw-r--r-- 1 root     root     207M Oct 27 05:30 colabfold_envdb_202108_db_aln.65
-rw-r--r-- 1 root     root     209M Oct 27 05:30 colabfold_envdb_202108_db_aln.66
-rw-r--r-- 1 root     root     207M Oct 27 05:30 colabfold_envdb_202108_db_aln.67
-rw-r--r-- 1 root     root     210M Oct 27 05:30 colabfold_envdb_202108_db_aln.68
-rw-r--r-- 1 root     root     209M Oct 27 05:30 colabfold_envdb_202108_db_aln.69
-rw-r--r-- 1 root     root     185M Oct 27 05:30 colabfold_envdb_202108_db_aln.7
-rw-r--r-- 1 root     root     210M Oct 27 05:30 colabfold_envdb_202108_db_aln.70
-rw-r--r-- 1 root     root     210M Oct 27 05:30 colabfold_envdb_202108_db_aln.71
-rw-r--r-- 1 root     root     210M Oct 27 05:30 colabfold_envdb_202108_db_aln.72
-rw-r--r-- 1 root     root     209M Oct 27 05:30 colabfold_envdb_202108_db_aln.73
-rw-r--r-- 1 root     root     210M Oct 27 05:30 colabfold_envdb_202108_db_aln.74
-rw-r--r-- 1 root     root     207M Oct 27 05:30 colabfold_envdb_202108_db_aln.75
-rw-r--r-- 1 root     root     209M Oct 27 05:30 colabfold_envdb_202108_db_aln.76
-rw-r--r-- 1 root     root     207M Oct 27 05:30 colabfold_envdb_202108_db_aln.77
-rw-r--r-- 1 root     root     210M Oct 27 05:30 colabfold_envdb_202108_db_aln.78
-rw-r--r-- 1 root     root     210M Oct 27 05:30 colabfold_envdb_202108_db_aln.79
-rw-r--r-- 1 root     root     199M Oct 27 05:30 colabfold_envdb_202108_db_aln.8
-rw-r--r-- 1 root     root     208M Oct 27 05:30 colabfold_envdb_202108_db_aln.80
-rw-r--r-- 1 root     root     208M Oct 27 05:30 colabfold_envdb_202108_db_aln.81
-rw-r--r-- 1 root     root     206M Oct 27 05:30 colabfold_envdb_202108_db_aln.82
-rw-r--r-- 1 root     root     209M Oct 27 05:30 colabfold_envdb_202108_db_aln.83
-rw-r--r-- 1 root     root     209M Oct 27 05:30 colabfold_envdb_202108_db_aln.84
-rw-r--r-- 1 root     root     206M Oct 27 05:30 colabfold_envdb_202108_db_aln.85
-rw-r--r-- 1 root     root     209M Oct 27 05:30 colabfold_envdb_202108_db_aln.86
-rw-r--r-- 1 root     root     208M Oct 27 05:30 colabfold_envdb_202108_db_aln.87
-rw-r--r-- 1 root     root     208M Oct 27 05:30 colabfold_envdb_202108_db_aln.88
-rw-r--r-- 1 root     root     207M Oct 27 05:30 colabfold_envdb_202108_db_aln.89
-rw-r--r-- 1 root     root     176M Oct 27 05:30 colabfold_envdb_202108_db_aln.9
-rw-r--r-- 1 root     root     211M Oct 27 05:30 colabfold_envdb_202108_db_aln.90
-rw-r--r-- 1 root     root     208M Oct 27 05:30 colabfold_envdb_202108_db_aln.91
-rw-r--r-- 1 root     root     231M Oct 27 05:30 colabfold_envdb_202108_db_aln.92
-rw-r--r-- 1 root     root     239M Oct 27 05:30 colabfold_envdb_202108_db_aln.93
-rw-r--r-- 1 root     root     233M Oct 27 05:30 colabfold_envdb_202108_db_aln.94
-rw-r--r-- 1 root     root     238M Oct 27 05:30 colabfold_envdb_202108_db_aln.95
-rw-r--r-- 1 root     root     208M Oct 27 05:30 colabfold_envdb_202108_db_aln.96
-rw-r--r-- 1 root     root     210M Oct 27 05:30 colabfold_envdb_202108_db_aln.97
-rw-r--r-- 1 root     root     208M Oct 27 05:30 colabfold_envdb_202108_db_aln.98
-rw-r--r-- 1 root     root     206M Oct 27 05:30 colabfold_envdb_202108_db_aln.99
-rw-r--r-- 1 root     root        4 Oct 27 05:31 colabfold_envdb_202108_db_aln.dbtype
-rw-r--r-- 1 root     root     4.9G Oct 27 05:31 colabfold_envdb_202108_db_aln.index
-rw-r--r-- 1 root     root        4 Oct 27 05:16 colabfold_envdb_202108_db.dbtype
-rw-r--r-- 1 root     root      24G Oct 27 05:12 colabfold_envdb_202108_db_h
-rw-r--r-- 1 root     root        4 Oct 27 05:13 colabfold_envdb_202108_db_h.dbtype
-rw-r--r-- 1 root     root      17G Oct 27 05:13 colabfold_envdb_202108_db_h.index
-rw-r--r-- 1 root     root     371M Oct 27 05:55 colabfold_envdb_202108_db.idx.0
-rw-r--r-- 1 root     root     211G Oct 27 05:55 colabfold_envdb_202108_db.idx.1
-rw-r--r-- 1 root     root     124G Oct 27 05:55 colabfold_envdb_202108_db.idx.2
-rw-r--r-- 1 root     root     124G Oct 27 05:55 colabfold_envdb_202108_db.idx.3
-rw-r--r-- 1 root     root        4 Oct 27 05:55 colabfold_envdb_202108_db.idx.dbtype
-rw-r--r-- 1 root     root      694 Oct 27 05:55 colabfold_envdb_202108_db.idx.index
-rw-r--r-- 1 root     root     4.9G Oct 27 05:16 colabfold_envdb_202108_db.index
-rw-r--r-- 1 root     root     688M Oct 27 05:24 colabfold_envdb_202108_db_seq.0
-rw-r--r-- 1 root     root     701M Oct 27 05:24 colabfold_envdb_202108_db_seq.1
-rw-r--r-- 1 root     root     697M Oct 27 05:24 colabfold_envdb_202108_db_seq.10
-rw-r--r-- 1 root     root     690M Oct 27 05:24 colabfold_envdb_202108_db_seq.100
-rw-r--r-- 1 root     root     689M Oct 27 05:24 colabfold_envdb_202108_db_seq.101
-rw-r--r-- 1 root     root     689M Oct 27 05:24 colabfold_envdb_202108_db_seq.102
-rw-r--r-- 1 root     root     684M Oct 27 05:24 colabfold_envdb_202108_db_seq.103
-rw-r--r-- 1 root     root     688M Oct 27 05:24 colabfold_envdb_202108_db_seq.104
-rw-r--r-- 1 root     root     687M Oct 27 05:24 colabfold_envdb_202108_db_seq.105
-rw-r--r-- 1 root     root     687M Oct 27 05:24 colabfold_envdb_202108_db_seq.106
-rw-r--r-- 1 root     root     683M Oct 27 05:24 colabfold_envdb_202108_db_seq.107
-rw-r--r-- 1 root     root     687M Oct 27 05:24 colabfold_envdb_202108_db_seq.108
-rw-r--r-- 1 root     root     688M Oct 27 05:24 colabfold_envdb_202108_db_seq.109
-rw-r--r-- 1 root     root     695M Oct 27 05:24 colabfold_envdb_202108_db_seq.11
-rw-r--r-- 1 root     root     688M Oct 27 05:24 colabfold_envdb_202108_db_seq.110
-rw-r--r-- 1 root     root     688M Oct 27 05:24 colabfold_envdb_202108_db_seq.111
-rw-r--r-- 1 root     root     686M Oct 27 05:24 colabfold_envdb_202108_db_seq.112
-rw-r--r-- 1 root     root     689M Oct 27 05:24 colabfold_envdb_202108_db_seq.113
-rw-r--r-- 1 root     root     690M Oct 27 05:24 colabfold_envdb_202108_db_seq.114
-rw-r--r-- 1 root     root     689M Oct 27 05:24 colabfold_envdb_202108_db_seq.115
-rw-r--r-- 1 root     root     687M Oct 27 05:24 colabfold_envdb_202108_db_seq.116
-rw-r--r-- 1 root     root     687M Oct 27 05:24 colabfold_envdb_202108_db_seq.117
-rw-r--r-- 1 root     root     688M Oct 27 05:24 colabfold_envdb_202108_db_seq.118
-rw-r--r-- 1 root     root     686M Oct 27 05:24 colabfold_envdb_202108_db_seq.119
-rw-r--r-- 1 root     root     696M Oct 27 05:24 colabfold_envdb_202108_db_seq.12
-rw-r--r-- 1 root     root     688M Oct 27 05:24 colabfold_envdb_202108_db_seq.120
-rw-r--r-- 1 root     root     687M Oct 27 05:24 colabfold_envdb_202108_db_seq.121
-rw-r--r-- 1 root     root     690M Oct 27 05:24 colabfold_envdb_202108_db_seq.122
-rw-r--r-- 1 root     root     683M Oct 27 05:24 colabfold_envdb_202108_db_seq.123
-rw-r--r-- 1 root     root     682M Oct 27 05:24 colabfold_envdb_202108_db_seq.124
-rw-r--r-- 1 root     root     682M Oct 27 05:24 colabfold_envdb_202108_db_seq.125
-rw-r--r-- 1 root     root     680M Oct 27 05:24 colabfold_envdb_202108_db_seq.126
-rw-r--r-- 1 root     root     686M Oct 27 05:24 colabfold_envdb_202108_db_seq.127
-rw-r--r-- 1 root     root     694M Oct 27 05:24 colabfold_envdb_202108_db_seq.13
-rw-r--r-- 1 root     root     697M Oct 27 05:24 colabfold_envdb_202108_db_seq.14
-rw-r--r-- 1 root     root     694M Oct 27 05:24 colabfold_envdb_202108_db_seq.15
-rw-r--r-- 1 root     root     697M Oct 27 05:24 colabfold_envdb_202108_db_seq.16
-rw-r--r-- 1 root     root     695M Oct 27 05:24 colabfold_envdb_202108_db_seq.17
-rw-r--r-- 1 root     root     695M Oct 27 05:24 colabfold_envdb_202108_db_seq.18
-rw-r--r-- 1 root     root     697M Oct 27 05:24 colabfold_envdb_202108_db_seq.19
-rw-r--r-- 1 root     root     702M Oct 27 05:24 colabfold_envdb_202108_db_seq.2
-rw-r--r-- 1 root     root     694M Oct 27 05:24 colabfold_envdb_202108_db_seq.20
-rw-r--r-- 1 root     root     694M Oct 27 05:24 colabfold_envdb_202108_db_seq.21
-rw-r--r-- 1 root     root     695M Oct 27 05:24 colabfold_envdb_202108_db_seq.22
-rw-r--r-- 1 root     root     695M Oct 27 05:24 colabfold_envdb_202108_db_seq.23
-rw-r--r-- 1 root     root     696M Oct 27 05:24 colabfold_envdb_202108_db_seq.24
-rw-r--r-- 1 root     root     693M Oct 27 05:24 colabfold_envdb_202108_db_seq.25
-rw-r--r-- 1 root     root     697M Oct 27 05:24 colabfold_envdb_202108_db_seq.26
-rw-r--r-- 1 root     root     695M Oct 27 05:24 colabfold_envdb_202108_db_seq.27
-rw-r--r-- 1 root     root     693M Oct 27 05:24 colabfold_envdb_202108_db_seq.28
-rw-r--r-- 1 root     root     693M Oct 27 05:24 colabfold_envdb_202108_db_seq.29
-rw-r--r-- 1 root     root     703M Oct 27 05:24 colabfold_envdb_202108_db_seq.3
-rw-r--r-- 1 root     root     697M Oct 27 05:24 colabfold_envdb_202108_db_seq.30
-rw-r--r-- 1 root     root     695M Oct 27 05:24 colabfold_envdb_202108_db_seq.31
-rw-r--r-- 1 root     root     694M Oct 27 05:24 colabfold_envdb_202108_db_seq.32
-rw-r--r-- 1 root     root     695M Oct 27 05:24 colabfold_envdb_202108_db_seq.33
-rw-r--r-- 1 root     root     695M Oct 27 05:24 colabfold_envdb_202108_db_seq.34
-rw-r--r-- 1 root     root     693M Oct 27 05:24 colabfold_envdb_202108_db_seq.35
-rw-r--r-- 1 root     root     694M Oct 27 05:24 colabfold_envdb_202108_db_seq.36
-rw-r--r-- 1 root     root     692M Oct 27 05:24 colabfold_envdb_202108_db_seq.37
-rw-r--r-- 1 root     root     696M Oct 27 05:24 colabfold_envdb_202108_db_seq.38
-rw-r--r-- 1 root     root     696M Oct 27 05:24 colabfold_envdb_202108_db_seq.39
-rw-r--r-- 1 root     root     701M Oct 27 05:24 colabfold_envdb_202108_db_seq.4
-rw-r--r-- 1 root     root     692M Oct 27 05:24 colabfold_envdb_202108_db_seq.40
-rw-r--r-- 1 root     root     696M Oct 27 05:24 colabfold_envdb_202108_db_seq.41
-rw-r--r-- 1 root     root     696M Oct 27 05:24 colabfold_envdb_202108_db_seq.42
-rw-r--r-- 1 root     root     694M Oct 27 05:24 colabfold_envdb_202108_db_seq.43
-rw-r--r-- 1 root     root     694M Oct 27 05:24 colabfold_envdb_202108_db_seq.44
-rw-r--r-- 1 root     root     692M Oct 27 05:24 colabfold_envdb_202108_db_seq.45
-rw-r--r-- 1 root     root     692M Oct 27 05:24 colabfold_envdb_202108_db_seq.46
-rw-r--r-- 1 root     root     694M Oct 27 05:24 colabfold_envdb_202108_db_seq.47
-rw-r--r-- 1 root     root     693M Oct 27 05:24 colabfold_envdb_202108_db_seq.48
-rw-r--r-- 1 root     root     694M Oct 27 05:24 colabfold_envdb_202108_db_seq.49
-rw-r--r-- 1 root     root     700M Oct 27 05:24 colabfold_envdb_202108_db_seq.5
-rw-r--r-- 1 root     root     693M Oct 27 05:24 colabfold_envdb_202108_db_seq.50
-rw-r--r-- 1 root     root     694M Oct 27 05:24 colabfold_envdb_202108_db_seq.51
-rw-r--r-- 1 root     root     692M Oct 27 05:24 colabfold_envdb_202108_db_seq.52
-rw-r--r-- 1 root     root     692M Oct 27 05:24 colabfold_envdb_202108_db_seq.53
-rw-r--r-- 1 root     root     692M Oct 27 05:24 colabfold_envdb_202108_db_seq.54
-rw-r--r-- 1 root     root     694M Oct 27 05:24 colabfold_envdb_202108_db_seq.55
-rw-r--r-- 1 root     root     690M Oct 27 05:24 colabfold_envdb_202108_db_seq.56
-rw-r--r-- 1 root     root     685M Oct 27 05:24 colabfold_envdb_202108_db_seq.57
-rw-r--r-- 1 root     root     689M Oct 27 05:24 colabfold_envdb_202108_db_seq.58
-rw-r--r-- 1 root     root     694M Oct 27 05:24 colabfold_envdb_202108_db_seq.59
-rw-r--r-- 1 root     root     697M Oct 27 05:24 colabfold_envdb_202108_db_seq.6
-rw-r--r-- 1 root     root     694M Oct 27 05:24 colabfold_envdb_202108_db_seq.60
-rw-r--r-- 1 root     root     690M Oct 27 05:24 colabfold_envdb_202108_db_seq.61
-rw-r--r-- 1 root     root     693M Oct 27 05:24 colabfold_envdb_202108_db_seq.62
-rw-r--r-- 1 root     root     690M Oct 27 05:24 colabfold_envdb_202108_db_seq.63
-rw-r--r-- 1 root     root     691M Oct 27 05:24 colabfold_envdb_202108_db_seq.64
-rw-r--r-- 1 root     root     691M Oct 27 05:24 colabfold_envdb_202108_db_seq.65
-rw-r--r-- 1 root     root     690M Oct 27 05:24 colabfold_envdb_202108_db_seq.66
-rw-r--r-- 1 root     root     693M Oct 27 05:24 colabfold_envdb_202108_db_seq.67
-rw-r--r-- 1 root     root     692M Oct 27 05:24 colabfold_envdb_202108_db_seq.68
-rw-r--r-- 1 root     root     692M Oct 27 05:24 colabfold_envdb_202108_db_seq.69
-rw-r--r-- 1 root     root     694M Oct 27 05:24 colabfold_envdb_202108_db_seq.7
-rw-r--r-- 1 root     root     692M Oct 27 05:24 colabfold_envdb_202108_db_seq.70
-rw-r--r-- 1 root     root     693M Oct 27 05:24 colabfold_envdb_202108_db_seq.71
-rw-r--r-- 1 root     root     690M Oct 27 05:24 colabfold_envdb_202108_db_seq.72
-rw-r--r-- 1 root     root     690M Oct 27 05:24 colabfold_envdb_202108_db_seq.73
-rw-r--r-- 1 root     root     688M Oct 27 05:24 colabfold_envdb_202108_db_seq.74
-rw-r--r-- 1 root     root     691M Oct 27 05:24 colabfold_envdb_202108_db_seq.75
-rw-r--r-- 1 root     root     689M Oct 27 05:24 colabfold_envdb_202108_db_seq.76
-rw-r--r-- 1 root     root     692M Oct 27 05:24 colabfold_envdb_202108_db_seq.77
-rw-r--r-- 1 root     root     690M Oct 27 05:24 colabfold_envdb_202108_db_seq.78
-rw-r--r-- 1 root     root     689M Oct 27 05:24 colabfold_envdb_202108_db_seq.79
-rw-r--r-- 1 root     root     697M Oct 27 05:24 colabfold_envdb_202108_db_seq.8
-rw-r--r-- 1 root     root     687M Oct 27 05:24 colabfold_envdb_202108_db_seq.80
-rw-r--r-- 1 root     root     687M Oct 27 05:24 colabfold_envdb_202108_db_seq.81
-rw-r--r-- 1 root     root     689M Oct 27 05:24 colabfold_envdb_202108_db_seq.82
-rw-r--r-- 1 root     root     689M Oct 27 05:24 colabfold_envdb_202108_db_seq.83
-rw-r--r-- 1 root     root     692M Oct 27 05:24 colabfold_envdb_202108_db_seq.84
-rw-r--r-- 1 root     root     690M Oct 27 05:24 colabfold_envdb_202108_db_seq.85
-rw-r--r-- 1 root     root     689M Oct 27 05:24 colabfold_envdb_202108_db_seq.86
-rw-r--r-- 1 root     root     691M Oct 27 05:24 colabfold_envdb_202108_db_seq.87
-rw-r--r-- 1 root     root     689M Oct 27 05:24 colabfold_envdb_202108_db_seq.88
-rw-r--r-- 1 root     root     689M Oct 27 05:24 colabfold_envdb_202108_db_seq.89
-rw-r--r-- 1 root     root     695M Oct 27 05:24 colabfold_envdb_202108_db_seq.9
-rw-r--r-- 1 root     root     689M Oct 27 05:24 colabfold_envdb_202108_db_seq.90
-rw-r--r-- 1 root     root     691M Oct 27 05:24 colabfold_envdb_202108_db_seq.91
-rw-r--r-- 1 root     root     692M Oct 27 05:24 colabfold_envdb_202108_db_seq.92
-rw-r--r-- 1 root     root     691M Oct 27 05:24 colabfold_envdb_202108_db_seq.93
-rw-r--r-- 1 root     root     692M Oct 27 05:24 colabfold_envdb_202108_db_seq.94
-rw-r--r-- 1 root     root     688M Oct 27 05:24 colabfold_envdb_202108_db_seq.95
-rw-r--r-- 1 root     root     691M Oct 27 05:24 colabfold_envdb_202108_db_seq.96
-rw-r--r-- 1 root     root     688M Oct 27 05:24 colabfold_envdb_202108_db_seq.97
-rw-r--r-- 1 root     root     689M Oct 27 05:24 colabfold_envdb_202108_db_seq.98
-rw-r--r-- 1 root     root     686M Oct 27 05:24 colabfold_envdb_202108_db_seq.99
-rw-r--r-- 1 root     root        4 Oct 27 05:27 colabfold_envdb_202108_db_seq.dbtype
lrwxrwxrwx 1 root     root       27 Oct 27 05:31 colabfold_envdb_202108_db_seq_h -> colabfold_envdb_202108_db_h
lrwxrwxrwx 1 root     root       34 Oct 27 05:31 colabfold_envdb_202108_db_seq_h.dbtype -> colabfold_envdb_202108_db_h.dbtype
lrwxrwxrwx 1 root     root       33 Oct 27 05:31 colabfold_envdb_202108_db_seq_h.index -> colabfold_envdb_202108_db_h.index
-rw-r--r-- 1 root     root      18G Oct 27 05:27 colabfold_envdb_202108_db_seq.index
-rw-r--r-- 1 ec2-user ec2-user  30G Sep 13  2021 colabfold_envdb_202108_h.tsv
-rw-r--r-- 1 ec2-user ec2-user 128G Sep 13  2021 colabfold_envdb_202108_seq.tsv
-rw-r--r-- 1 root     root     110G Oct 27 04:36 colabfold_envdb_202108.tar.gz
-rw-r--r-- 1 ec2-user ec2-user  38G Sep 10  2021 colabfold_envdb_202108.tsv
-rw-rw-r-- 1 ec2-user ec2-user  119 Apr  1  2022 md5sum
drwxr-xr-x 4 root     root       37 Oct 27 06:15 pdb
-rw-r--r-- 1 root     root      26M Oct 27 05:55 pdb70_220313
-rw-r--r-- 1 root     root        4 Oct 27 05:55 pdb70_220313.dbtype
-rw-r--r-- 1 root     root      21M Oct 27 05:55 pdb70_220313.fasta.gz
-rw-r--r-- 1 root     root      12M Oct 27 05:55 pdb70_220313_h
-rw-r--r-- 1 root     root        4 Oct 27 05:55 pdb70_220313_h.dbtype
-rw-r--r-- 1 root     root     1.6M Oct 27 05:55 pdb70_220313_h.index
-rw-r--r-- 1 root     root     1.1G Oct 27 05:55 pdb70_220313.idx
-rw-r--r-- 1 root     root        4 Oct 27 05:55 pdb70_220313.idx.dbtype
-rw-r--r-- 1 root     root      406 Oct 27 05:55 pdb70_220313.idx.index
-rw-r--r-- 1 root     root     1.7M Oct 27 05:55 pdb70_220313.index
-rw-r--r-- 1 root     root     1.4M Oct 27 05:55 pdb70_220313.lookup
-rw-r--r-- 1 root     root       24 Oct 27 05:55 pdb70_220313.source
-rw------- 1   513478     9100  74G Mar 18  2022 pdb70_a3m.ffdata
-rw------- 1   513478     9100 2.3M Mar 18  2022 pdb70_a3m.ffindex
-rw-r--r-- 1 root     root      27G Oct 27 06:06 pdb70_from_mmcif_220313.tar.gz
-rw-r--r-- 1 root     root        0 Oct 27 06:15 PDB70_READY
-rw-r--r-- 1 root     root        0 Oct 27 06:48 PDB_MMCIF_READY
-rw-r--r-- 1 root     root        0 Oct 27 05:55 PDB_READY
drwxr-xr-x 3 root     root       47 Oct 31 14:57 tmp
drwxr-xr-x 3 root     root       48 Oct 27 03:15 tmp1
drwxr-xr-x 3 root     root       48 Oct 27 05:31 tmp2
drwxr-xr-x 3 root     root       48 Oct 27 05:55 tmp3
-rw-r--r-- 1 root     root     1.3G Apr  1  2022 uniref30_2103_taxonomy.tar.gz
-rw------- 1   528745     9100  26G Jun  1 13:32 uniref30_2202_aln.tsv
-rw-r--r-- 1 root     root      82M Oct 27 03:07 uniref30_2202_db.0
-rw-r--r-- 1 root     root      34M Oct 27 03:07 uniref30_2202_db.1
-rw-r--r-- 1 root     root      21M Oct 27 03:07 uniref30_2202_db.10
-rw-r--r-- 1 root     root      35M Oct 27 03:07 uniref30_2202_db.100
-rw-r--r-- 1 root     root      24M Oct 27 03:07 uniref30_2202_db.101
-rw-r--r-- 1 root     root      17M Oct 27 03:07 uniref30_2202_db.102
-rw-r--r-- 1 root     root      78M Oct 27 03:07 uniref30_2202_db.103
-rw-r--r-- 1 root     root      37M Oct 27 03:07 uniref30_2202_db.104
-rw-r--r-- 1 root     root      24M Oct 27 03:07 uniref30_2202_db.105
-rw-r--r-- 1 root     root      18M Oct 27 03:07 uniref30_2202_db.106
-rw-r--r-- 1 root     root      74M Oct 27 03:07 uniref30_2202_db.107
-rw-r--r-- 1 root     root      39M Oct 27 03:07 uniref30_2202_db.108
-rw-r--r-- 1 root     root      25M Oct 27 03:07 uniref30_2202_db.109
-rw-r--r-- 1 root     root      54M Oct 27 03:07 uniref30_2202_db.11
-rw-r--r-- 1 root     root      19M Oct 27 03:07 uniref30_2202_db.110
-rw-r--r-- 1 root     root      69M Oct 27 03:07 uniref30_2202_db.111
-rw-r--r-- 1 root     root      42M Oct 27 03:07 uniref30_2202_db.112
-rw-r--r-- 1 root     root      26M Oct 27 03:07 uniref30_2202_db.113
-rw-r--r-- 1 root     root      19M Oct 27 03:07 uniref30_2202_db.114
-rw-r--r-- 1 root     root      63M Oct 27 03:07 uniref30_2202_db.115
-rw-r--r-- 1 root     root      46M Oct 27 03:07 uniref30_2202_db.116
-rw-r--r-- 1 root     root      28M Oct 27 03:07 uniref30_2202_db.117
-rw-r--r-- 1 root     root      20M Oct 27 03:07 uniref30_2202_db.118
-rw-r--r-- 1 root     root      55M Oct 27 03:07 uniref30_2202_db.119
-rw-r--r-- 1 root     root      51M Oct 27 03:07 uniref30_2202_db.12
-rw-r--r-- 1 root     root      51M Oct 27 03:07 uniref30_2202_db.120
-rw-r--r-- 1 root     root      30M Oct 27 03:07 uniref30_2202_db.121
-rw-r--r-- 1 root     root      21M Oct 27 03:07 uniref30_2202_db.122
-rw-r--r-- 1 root     root      43M Oct 27 03:07 uniref30_2202_db.123
-rw-r--r-- 1 root     root      60M Oct 27 03:07 uniref30_2202_db.124
-rw-r--r-- 1 root     root      32M Oct 27 03:07 uniref30_2202_db.125
-rw-r--r-- 1 root     root      22M Oct 27 03:07 uniref30_2202_db.126
-rw-r--r-- 1 root     root      16M Oct 27 03:07 uniref30_2202_db.127
-rw-r--r-- 1 root     root      29M Oct 27 03:07 uniref30_2202_db.13
-rw-r--r-- 1 root     root      20M Oct 27 03:07 uniref30_2202_db.14
-rw-r--r-- 1 root     root      60M Oct 27 03:07 uniref30_2202_db.15
-rw-r--r-- 1 root     root      47M Oct 27 03:07 uniref30_2202_db.16
-rw-r--r-- 1 root     root      28M Oct 27 03:07 uniref30_2202_db.17
-rw-r--r-- 1 root     root      20M Oct 27 03:07 uniref30_2202_db.18
-rw-r--r-- 1 root     root      65M Oct 27 03:07 uniref30_2202_db.19
-rw-r--r-- 1 root     root      23M Oct 27 03:07 uniref30_2202_db.2
-rw-r--r-- 1 root     root      44M Oct 27 03:07 uniref30_2202_db.20
-rw-r--r-- 1 root     root      27M Oct 27 03:07 uniref30_2202_db.21
-rw-r--r-- 1 root     root      19M Oct 27 03:07 uniref30_2202_db.22
-rw-r--r-- 1 root     root      69M Oct 27 03:07 uniref30_2202_db.23
-rw-r--r-- 1 root     root      41M Oct 27 03:07 uniref30_2202_db.24
-rw-r--r-- 1 root     root      26M Oct 27 03:07 uniref30_2202_db.25
-rw-r--r-- 1 root     root      19M Oct 27 03:07 uniref30_2202_db.26
-rw-r--r-- 1 root     root      73M Oct 27 03:07 uniref30_2202_db.27
-rw-r--r-- 1 root     root      39M Oct 27 03:07 uniref30_2202_db.28
-rw-r--r-- 1 root     root      25M Oct 27 03:07 uniref30_2202_db.29
-rw-r--r-- 1 root     root      36M Oct 27 03:07 uniref30_2202_db.3
-rw-r--r-- 1 root     root      18M Oct 27 03:07 uniref30_2202_db.30
-rw-r--r-- 1 root     root      75M Oct 27 03:07 uniref30_2202_db.31
-rw-r--r-- 1 root     root      37M Oct 27 03:07 uniref30_2202_db.32
-rw-r--r-- 1 root     root      24M Oct 27 03:07 uniref30_2202_db.33
-rw-r--r-- 1 root     root      17M Oct 27 03:07 uniref30_2202_db.34
-rw-r--r-- 1 root     root      78M Oct 27 03:07 uniref30_2202_db.35
-rw-r--r-- 1 root     root      35M Oct 27 03:07 uniref30_2202_db.36
-rw-r--r-- 1 root     root      23M Oct 27 03:07 uniref30_2202_db.37
-rw-r--r-- 1 root     root      16M Oct 27 03:07 uniref30_2202_db.38
-rw-r--r-- 1 root     root      81M Oct 27 03:07 uniref30_2202_db.39
-rw-r--r-- 1 root     root      65M Oct 27 03:07 uniref30_2202_db.4
-rw-r--r-- 1 root     root      34M Oct 27 03:07 uniref30_2202_db.40
-rw-r--r-- 1 root     root      23M Oct 27 03:07 uniref30_2202_db.41
-rw-r--r-- 1 root     root      30M Oct 27 03:07 uniref30_2202_db.42
-rw-r--r-- 1 root     root      70M Oct 27 03:07 uniref30_2202_db.43
-rw-r--r-- 1 root     root      33M Oct 27 03:07 uniref30_2202_db.44
-rw-r--r-- 1 root     root      22M Oct 27 03:07 uniref30_2202_db.45
-rw-r--r-- 1 root     root      36M Oct 27 03:07 uniref30_2202_db.46
-rw-r--r-- 1 root     root      64M Oct 27 03:07 uniref30_2202_db.47
-rw-r--r-- 1 root     root      32M Oct 27 03:07 uniref30_2202_db.48
-rw-r--r-- 1 root     root      22M Oct 27 03:07 uniref30_2202_db.49
-rw-r--r-- 1 root     root      32M Oct 27 03:07 uniref30_2202_db.5
-rw-r--r-- 1 root     root      41M Oct 27 03:07 uniref30_2202_db.50
-rw-r--r-- 1 root     root      61M Oct 27 03:07 uniref30_2202_db.51
-rw-r--r-- 1 root     root      31M Oct 27 03:07 uniref30_2202_db.52
-rw-r--r-- 1 root     root      22M Oct 27 03:07 uniref30_2202_db.53
-rw-r--r-- 1 root     root      44M Oct 27 03:07 uniref30_2202_db.54
-rw-r--r-- 1 root     root      58M Oct 27 03:07 uniref30_2202_db.55
-rw-r--r-- 1 root     root      31M Oct 27 03:07 uniref30_2202_db.56
-rw-r--r-- 1 root     root      21M Oct 27 03:07 uniref30_2202_db.57
-rw-r--r-- 1 root     root      47M Oct 27 03:07 uniref30_2202_db.58
-rw-r--r-- 1 root     root      56M Oct 27 03:07 uniref30_2202_db.59
-rw-r--r-- 1 root     root      22M Oct 27 03:07 uniref30_2202_db.6
-rw-r--r-- 1 root     root      30M Oct 27 03:07 uniref30_2202_db.60
-rw-r--r-- 1 root     root      21M Oct 27 03:07 uniref30_2202_db.61
-rw-r--r-- 1 root     root      48M Oct 27 03:07 uniref30_2202_db.62
-rw-r--r-- 1 root     root      55M Oct 27 03:07 uniref30_2202_db.63
-rw-r--r-- 1 root     root      30M Oct 27 03:07 uniref30_2202_db.64
-rw-r--r-- 1 root     root      21M Oct 27 03:07 uniref30_2202_db.65
-rw-r--r-- 1 root     root      49M Oct 27 03:07 uniref30_2202_db.66
-rw-r--r-- 1 root     root      54M Oct 27 03:07 uniref30_2202_db.67
-rw-r--r-- 1 root     root      30M Oct 27 03:07 uniref30_2202_db.68
-rw-r--r-- 1 root     root      21M Oct 27 03:07 uniref30_2202_db.69
-rw-r--r-- 1 root     root      46M Oct 27 03:07 uniref30_2202_db.7
-rw-r--r-- 1 root     root      49M Oct 27 03:07 uniref30_2202_db.70
-rw-r--r-- 1 root     root      55M Oct 27 03:07 uniref30_2202_db.71
-rw-r--r-- 1 root     root      30M Oct 27 03:07 uniref30_2202_db.72
-rw-r--r-- 1 root     root      21M Oct 27 03:07 uniref30_2202_db.73
-rw-r--r-- 1 root     root      49M Oct 27 03:07 uniref30_2202_db.74
-rw-r--r-- 1 root     root      55M Oct 27 03:07 uniref30_2202_db.75
-rw-r--r-- 1 root     root      30M Oct 27 03:07 uniref30_2202_db.76
-rw-r--r-- 1 root     root      21M Oct 27 03:07 uniref30_2202_db.77
-rw-r--r-- 1 root     root      48M Oct 27 03:07 uniref30_2202_db.78
-rw-r--r-- 1 root     root      56M Oct 27 03:07 uniref30_2202_db.79
-rw-r--r-- 1 root     root      57M Oct 27 03:07 uniref30_2202_db.8
-rw-r--r-- 1 root     root      30M Oct 27 03:07 uniref30_2202_db.80
-rw-r--r-- 1 root     root      21M Oct 27 03:07 uniref30_2202_db.81
-rw-r--r-- 1 root     root      45M Oct 27 03:07 uniref30_2202_db.82
-rw-r--r-- 1 root     root      58M Oct 27 03:07 uniref30_2202_db.83
-rw-r--r-- 1 root     root      31M Oct 27 03:07 uniref30_2202_db.84
-rw-r--r-- 1 root     root      22M Oct 27 03:07 uniref30_2202_db.85
-rw-r--r-- 1 root     root      42M Oct 27 03:07 uniref30_2202_db.86
-rw-r--r-- 1 root     root      60M Oct 27 03:07 uniref30_2202_db.87
-rw-r--r-- 1 root     root      31M Oct 27 03:07 uniref30_2202_db.88
-rw-r--r-- 1 root     root      22M Oct 27 03:07 uniref30_2202_db.89
-rw-r--r-- 1 root     root      30M Oct 27 03:07 uniref30_2202_db.9
-rw-r--r-- 1 root     root      37M Oct 27 03:07 uniref30_2202_db.90
-rw-r--r-- 1 root     root      64M Oct 27 03:07 uniref30_2202_db.91
-rw-r--r-- 1 root     root      32M Oct 27 03:07 uniref30_2202_db.92
-rw-r--r-- 1 root     root      22M Oct 27 03:07 uniref30_2202_db.93
-rw-r--r-- 1 root     root      30M Oct 27 03:07 uniref30_2202_db.94
-rw-r--r-- 1 root     root      70M Oct 27 03:07 uniref30_2202_db.95
-rw-r--r-- 1 root     root      33M Oct 27 03:07 uniref30_2202_db.96
-rw-r--r-- 1 root     root      23M Oct 27 03:07 uniref30_2202_db.97
-rw-r--r-- 1 root     root      16M Oct 27 03:07 uniref30_2202_db.98
-rw-r--r-- 1 root     root      81M Oct 27 03:07 uniref30_2202_db.99
-rw-r--r-- 1 root     root     132M Oct 27 03:14 uniref30_2202_db_aln.0
-rw-r--r-- 1 root     root      60M Oct 27 03:14 uniref30_2202_db_aln.1
-rw-r--r-- 1 root     root      23M Oct 27 03:14 uniref30_2202_db_aln.10
-rw-r--r-- 1 root     root      61M Oct 27 03:14 uniref30_2202_db_aln.100
-rw-r--r-- 1 root     root      32M Oct 27 03:14 uniref30_2202_db_aln.101
-rw-r--r-- 1 root     root      20M Oct 27 03:14 uniref30_2202_db_aln.102
-rw-r--r-- 1 root     root     117M Oct 27 03:14 uniref30_2202_db_aln.103
-rw-r--r-- 1 root     root      67M Oct 27 03:14 uniref30_2202_db_aln.104
-rw-r--r-- 1 root     root      32M Oct 27 03:14 uniref30_2202_db_aln.105
-rw-r--r-- 1 root     root      21M Oct 27 03:14 uniref30_2202_db_aln.106
-rw-r--r-- 1 root     root     106M Oct 27 03:14 uniref30_2202_db_aln.107
-rw-r--r-- 1 root     root      75M Oct 27 03:14 uniref30_2202_db_aln.108
-rw-r--r-- 1 root     root      35M Oct 27 03:14 uniref30_2202_db_aln.109
-rw-r--r-- 1 root     root      62M Oct 27 03:14 uniref30_2202_db_aln.11
-rw-r--r-- 1 root     root      21M Oct 27 03:14 uniref30_2202_db_aln.110
-rw-r--r-- 1 root     root      96M Oct 27 03:14 uniref30_2202_db_aln.111
-rw-r--r-- 1 root     root      82M Oct 27 03:14 uniref30_2202_db_aln.112
-rw-r--r-- 1 root     root      38M Oct 27 03:14 uniref30_2202_db_aln.113
-rw-r--r-- 1 root     root      23M Oct 27 03:14 uniref30_2202_db_aln.114
-rw-r--r-- 1 root     root      78M Oct 27 03:14 uniref30_2202_db_aln.115
-rw-r--r-- 1 root     root      97M Oct 27 03:14 uniref30_2202_db_aln.116
-rw-r--r-- 1 root     root      41M Oct 27 03:14 uniref30_2202_db_aln.117
-rw-r--r-- 1 root     root      24M Oct 27 03:14 uniref30_2202_db_aln.118
-rw-r--r-- 1 root     root      62M Oct 27 03:14 uniref30_2202_db_aln.119
-rw-r--r-- 1 root     root      99M Oct 27 03:14 uniref30_2202_db_aln.12
-rw-r--r-- 1 root     root     108M Oct 27 03:14 uniref30_2202_db_aln.120
-rw-r--r-- 1 root     root      47M Oct 27 03:14 uniref30_2202_db_aln.121
-rw-r--r-- 1 root     root      26M Oct 27 03:14 uniref30_2202_db_aln.122
-rw-r--r-- 1 root     root      43M Oct 27 03:14 uniref30_2202_db_aln.123
-rw-r--r-- 1 root     root     118M Oct 27 03:14 uniref30_2202_db_aln.124
-rw-r--r-- 1 root     root      53M Oct 27 03:14 uniref30_2202_db_aln.125
-rw-r--r-- 1 root     root      29M Oct 27 03:14 uniref30_2202_db_aln.126
-rw-r--r-- 1 root     root      19M Oct 27 03:14 uniref30_2202_db_aln.127
-rw-r--r-- 1 root     root      40M Oct 27 03:14 uniref30_2202_db_aln.13
-rw-r--r-- 1 root     root      22M Oct 27 03:14 uniref30_2202_db_aln.14
-rw-r--r-- 1 root     root      73M Oct 27 03:14 uniref30_2202_db_aln.15
-rw-r--r-- 1 root     root      93M Oct 27 03:14 uniref30_2202_db_aln.16
-rw-r--r-- 1 root     root      36M Oct 27 03:14 uniref30_2202_db_aln.17
-rw-r--r-- 1 root     root      21M Oct 27 03:14 uniref30_2202_db_aln.18
-rw-r--r-- 1 root     root      85M Oct 27 03:14 uniref30_2202_db_aln.19
-rw-r--r-- 1 root     root      28M Oct 27 03:14 uniref30_2202_db_aln.2
-rw-r--r-- 1 root     root      80M Oct 27 03:14 uniref30_2202_db_aln.20
-rw-r--r-- 1 root     root      33M Oct 27 03:14 uniref30_2202_db_aln.21
-rw-r--r-- 1 root     root      20M Oct 27 03:14 uniref30_2202_db_aln.22
-rw-r--r-- 1 root     root      96M Oct 27 03:14 uniref30_2202_db_aln.23
-rw-r--r-- 1 root     root      76M Oct 27 03:14 uniref30_2202_db_aln.24
-rw-r--r-- 1 root     root      32M Oct 27 03:14 uniref30_2202_db_aln.25
-rw-r--r-- 1 root     root      19M Oct 27 03:14 uniref30_2202_db_aln.26
-rw-r--r-- 1 root     root     102M Oct 27 03:14 uniref30_2202_db_aln.27
-rw-r--r-- 1 root     root      69M Oct 27 03:14 uniref30_2202_db_aln.28
-rw-r--r-- 1 root     root      30M Oct 27 03:14 uniref30_2202_db_aln.29
-rw-r--r-- 1 root     root      33M Oct 27 03:14 uniref30_2202_db_aln.3
-rw-r--r-- 1 root     root      19M Oct 27 03:14 uniref30_2202_db_aln.30
-rw-r--r-- 1 root     root     108M Oct 27 03:14 uniref30_2202_db_aln.31
-rw-r--r-- 1 root     root      63M Oct 27 03:14 uniref30_2202_db_aln.32
-rw-r--r-- 1 root     root      29M Oct 27 03:14 uniref30_2202_db_aln.33
-rw-r--r-- 1 root     root      19M Oct 27 03:14 uniref30_2202_db_aln.34
-rw-r--r-- 1 root     root     119M Oct 27 03:14 uniref30_2202_db_aln.35
-rw-r--r-- 1 root     root      57M Oct 27 03:14 uniref30_2202_db_aln.36
-rw-r--r-- 1 root     root      28M Oct 27 03:14 uniref30_2202_db_aln.37
-rw-r--r-- 1 root     root      17M Oct 27 03:14 uniref30_2202_db_aln.38
-rw-r--r-- 1 root     root     127M Oct 27 03:14 uniref30_2202_db_aln.39
-rw-r--r-- 1 root     root     120M Oct 27 03:14 uniref30_2202_db_aln.4
-rw-r--r-- 1 root     root      55M Oct 27 03:14 uniref30_2202_db_aln.40
-rw-r--r-- 1 root     root      27M Oct 27 03:14 uniref30_2202_db_aln.41
-rw-r--r-- 1 root     root      27M Oct 27 03:14 uniref30_2202_db_aln.42
-rw-r--r-- 1 root     root     122M Oct 27 03:14 uniref30_2202_db_aln.43
-rw-r--r-- 1 root     root      51M Oct 27 03:14 uniref30_2202_db_aln.44
-rw-r--r-- 1 root     root      27M Oct 27 03:14 uniref30_2202_db_aln.45
-rw-r--r-- 1 root     root      34M Oct 27 03:14 uniref30_2202_db_aln.46
-rw-r--r-- 1 root     root     110M Oct 27 03:14 uniref30_2202_db_aln.47
-rw-r--r-- 1 root     root      50M Oct 27 03:14 uniref30_2202_db_aln.48
-rw-r--r-- 1 root     root      25M Oct 27 03:14 uniref30_2202_db_aln.49
-rw-r--r-- 1 root     root      48M Oct 27 03:14 uniref30_2202_db_aln.5
-rw-r--r-- 1 root     root      39M Oct 27 03:14 uniref30_2202_db_aln.50
-rw-r--r-- 1 root     root     112M Oct 27 03:14 uniref30_2202_db_aln.51
-rw-r--r-- 1 root     root      48M Oct 27 03:14 uniref30_2202_db_aln.52
-rw-r--r-- 1 root     root      25M Oct 27 03:14 uniref30_2202_db_aln.53
-rw-r--r-- 1 root     root      45M Oct 27 03:14 uniref30_2202_db_aln.54
-rw-r--r-- 1 root     root     107M Oct 27 03:14 uniref30_2202_db_aln.55
-rw-r--r-- 1 root     root      44M Oct 27 03:14 uniref30_2202_db_aln.56
-rw-r--r-- 1 root     root      24M Oct 27 03:14 uniref30_2202_db_aln.57
-rw-r--r-- 1 root     root      47M Oct 27 03:14 uniref30_2202_db_aln.58
-rw-r--r-- 1 root     root     112M Oct 27 03:14 uniref30_2202_db_aln.59
-rw-r--r-- 1 root     root      25M Oct 27 03:14 uniref30_2202_db_aln.6
-rw-r--r-- 1 root     root      46M Oct 27 03:14 uniref30_2202_db_aln.60
-rw-r--r-- 1 root     root      25M Oct 27 03:14 uniref30_2202_db_aln.61
-rw-r--r-- 1 root     root      49M Oct 27 03:14 uniref30_2202_db_aln.62
-rw-r--r-- 1 root     root     105M Oct 27 03:14 uniref30_2202_db_aln.63
-rw-r--r-- 1 root     root      45M Oct 27 03:14 uniref30_2202_db_aln.64
-rw-r--r-- 1 root     root      25M Oct 27 03:14 uniref30_2202_db_aln.65
-rw-r--r-- 1 root     root      52M Oct 27 03:14 uniref30_2202_db_aln.66
-rw-r--r-- 1 root     root     104M Oct 27 03:14 uniref30_2202_db_aln.67
-rw-r--r-- 1 root     root      45M Oct 27 03:14 uniref30_2202_db_aln.68
-rw-r--r-- 1 root     root      25M Oct 27 03:14 uniref30_2202_db_aln.69
-rw-r--r-- 1 root     root      51M Oct 27 03:14 uniref30_2202_db_aln.7
-rw-r--r-- 1 root     root      52M Oct 27 03:14 uniref30_2202_db_aln.70
-rw-r--r-- 1 root     root     109M Oct 27 03:14 uniref30_2202_db_aln.71
-rw-r--r-- 1 root     root      44M Oct 27 03:14 uniref30_2202_db_aln.72
-rw-r--r-- 1 root     root      24M Oct 27 03:14 uniref30_2202_db_aln.73
-rw-r--r-- 1 root     root      52M Oct 27 03:14 uniref30_2202_db_aln.74
-rw-r--r-- 1 root     root     102M Oct 27 03:14 uniref30_2202_db_aln.75
-rw-r--r-- 1 root     root      44M Oct 27 03:14 uniref30_2202_db_aln.76
-rw-r--r-- 1 root     root      24M Oct 27 03:14 uniref30_2202_db_aln.77
-rw-r--r-- 1 root     root      50M Oct 27 03:14 uniref30_2202_db_aln.78
-rw-r--r-- 1 root     root     110M Oct 27 03:14 uniref30_2202_db_aln.79
-rw-r--r-- 1 root     root     110M Oct 27 03:14 uniref30_2202_db_aln.8
-rw-r--r-- 1 root     root      46M Oct 27 03:14 uniref30_2202_db_aln.80
-rw-r--r-- 1 root     root      25M Oct 27 03:14 uniref30_2202_db_aln.81
-rw-r--r-- 1 root     root      48M Oct 27 03:14 uniref30_2202_db_aln.82
-rw-r--r-- 1 root     root     105M Oct 27 03:14 uniref30_2202_db_aln.83
-rw-r--r-- 1 root     root      47M Oct 27 03:14 uniref30_2202_db_aln.84
-rw-r--r-- 1 root     root      27M Oct 27 03:14 uniref30_2202_db_aln.85
-rw-r--r-- 1 root     root      42M Oct 27 03:14 uniref30_2202_db_aln.86
-rw-r--r-- 1 root     root     113M Oct 27 03:14 uniref30_2202_db_aln.87
-rw-r--r-- 1 root     root      49M Oct 27 03:14 uniref30_2202_db_aln.88
-rw-r--r-- 1 root     root      26M Oct 27 03:14 uniref30_2202_db_aln.89
-rw-r--r-- 1 root     root      44M Oct 27 03:14 uniref30_2202_db_aln.9
-rw-r--r-- 1 root     root      36M Oct 27 03:14 uniref30_2202_db_aln.90
-rw-r--r-- 1 root     root     118M Oct 27 03:14 uniref30_2202_db_aln.91
-rw-r--r-- 1 root     root      51M Oct 27 03:14 uniref30_2202_db_aln.92
-rw-r--r-- 1 root     root      27M Oct 27 03:14 uniref30_2202_db_aln.93
-rw-r--r-- 1 root     root      28M Oct 27 03:14 uniref30_2202_db_aln.94
-rw-r--r-- 1 root     root     123M Oct 27 03:14 uniref30_2202_db_aln.95
-rw-r--r-- 1 root     root      56M Oct 27 03:14 uniref30_2202_db_aln.96
-rw-r--r-- 1 root     root      29M Oct 27 03:14 uniref30_2202_db_aln.97
-rw-r--r-- 1 root     root      19M Oct 27 03:14 uniref30_2202_db_aln.98
-rw-r--r-- 1 root     root     125M Oct 27 03:14 uniref30_2202_db_aln.99
-rw-r--r-- 1 root     root        4 Oct 27 03:14 uniref30_2202_db_aln.dbtype
-rw-r--r-- 1 root     root     730M Oct 27 03:14 uniref30_2202_db_aln.index
-rw-r--r-- 1 root     root        4 Oct 27 03:07 uniref30_2202_db.dbtype
-rw-r--r-- 1 root     root     3.7G Oct 27 03:06 uniref30_2202_db_h
-rw-r--r-- 1 root     root        4 Oct 27 03:07 uniref30_2202_db_h.dbtype
-rw-r--r-- 1 root     root     6.7G Oct 27 03:07 uniref30_2202_db_h.index
-rw-r--r-- 1 root     root     157G Oct 31 15:27 uniref30_2202_db.idx
-rw-r--r-- 1 root     root        4 Oct 31 15:27 uniref30_2202_db.idx.dbtype
-rw-r--r-- 1 root     root      512 Oct 31 15:27 uniref30_2202_db.idx.index
-rw-r--r-- 1 root     root     740M Oct 27 03:07 uniref30_2202_db.index
-rw-r--r-- 1 ec2-user ec2-user 2.1G Apr  1  2022 uniref30_2202_db_mapping
-rw-r--r-- 1 root     root     1.1G Oct 27 03:12 uniref30_2202_db_seq.0
-rw-r--r-- 1 root     root     542M Oct 27 03:12 uniref30_2202_db_seq.1
-rw-r--r-- 1 root     root     376M Oct 27 03:12 uniref30_2202_db_seq.10
-rw-r--r-- 1 root     root     1.1G Oct 27 03:12 uniref30_2202_db_seq.100
-rw-r--r-- 1 root     root     542M Oct 27 03:12 uniref30_2202_db_seq.101
-rw-r--r-- 1 root     root     376M Oct 27 03:12 uniref30_2202_db_seq.102
-rw-r--r-- 1 root     root     222M Oct 27 03:12 uniref30_2202_db_seq.103
-rw-r--r-- 1 root     root     1.1G Oct 27 03:12 uniref30_2202_db_seq.104
-rw-r--r-- 1 root     root     541M Oct 27 03:12 uniref30_2202_db_seq.105
-rw-r--r-- 1 root     root     376M Oct 27 03:12 uniref30_2202_db_seq.106
-rw-r--r-- 1 root     root     222M Oct 27 03:12 uniref30_2202_db_seq.107
-rw-r--r-- 1 root     root     1.1G Oct 27 03:12 uniref30_2202_db_seq.108
-rw-r--r-- 1 root     root     542M Oct 27 03:12 uniref30_2202_db_seq.109
-rw-r--r-- 1 root     root     222M Oct 27 03:12 uniref30_2202_db_seq.11
-rw-r--r-- 1 root     root     376M Oct 27 03:12 uniref30_2202_db_seq.110
-rw-r--r-- 1 root     root     222M Oct 27 03:12 uniref30_2202_db_seq.111
-rw-r--r-- 1 root     root     1.1G Oct 27 03:12 uniref30_2202_db_seq.112
-rw-r--r-- 1 root     root     542M Oct 27 03:12 uniref30_2202_db_seq.113
-rw-r--r-- 1 root     root     376M Oct 27 03:12 uniref30_2202_db_seq.114
-rw-r--r-- 1 root     root     222M Oct 27 03:12 uniref30_2202_db_seq.115
-rw-r--r-- 1 root     root     1.1G Oct 27 03:12 uniref30_2202_db_seq.116
-rw-r--r-- 1 root     root     542M Oct 27 03:12 uniref30_2202_db_seq.117
-rw-r--r-- 1 root     root     376M Oct 27 03:12 uniref30_2202_db_seq.118
-rw-r--r-- 1 root     root     222M Oct 27 03:12 uniref30_2202_db_seq.119
-rw-r--r-- 1 root     root     1.1G Oct 27 03:12 uniref30_2202_db_seq.12
-rw-r--r-- 1 root     root     1.1G Oct 27 03:12 uniref30_2202_db_seq.120
-rw-r--r-- 1 root     root     542M Oct 27 03:12 uniref30_2202_db_seq.121
-rw-r--r-- 1 root     root     376M Oct 27 03:12 uniref30_2202_db_seq.122
-rw-r--r-- 1 root     root     222M Oct 27 03:12 uniref30_2202_db_seq.123
-rw-r--r-- 1 root     root     1.1G Oct 27 03:12 uniref30_2202_db_seq.124
-rw-r--r-- 1 root     root     542M Oct 27 03:12 uniref30_2202_db_seq.125
-rw-r--r-- 1 root     root     376M Oct 27 03:12 uniref30_2202_db_seq.126
-rw-r--r-- 1 root     root     222M Oct 27 03:12 uniref30_2202_db_seq.127
-rw-r--r-- 1 root     root     542M Oct 27 03:12 uniref30_2202_db_seq.13
-rw-r--r-- 1 root     root     376M Oct 27 03:12 uniref30_2202_db_seq.14
-rw-r--r-- 1 root     root     222M Oct 27 03:12 uniref30_2202_db_seq.15
-rw-r--r-- 1 root     root     1.1G Oct 27 03:12 uniref30_2202_db_seq.16
-rw-r--r-- 1 root     root     541M Oct 27 03:12 uniref30_2202_db_seq.17
-rw-r--r-- 1 root     root     376M Oct 27 03:12 uniref30_2202_db_seq.18
-rw-r--r-- 1 root     root     222M Oct 27 03:12 uniref30_2202_db_seq.19
-rw-r--r-- 1 root     root     375M Oct 27 03:12 uniref30_2202_db_seq.2
-rw-r--r-- 1 root     root     1.1G Oct 27 03:12 uniref30_2202_db_seq.20
-rw-r--r-- 1 root     root     542M Oct 27 03:12 uniref30_2202_db_seq.21
-rw-r--r-- 1 root     root     376M Oct 27 03:12 uniref30_2202_db_seq.22
-rw-r--r-- 1 root     root     222M Oct 27 03:12 uniref30_2202_db_seq.23
-rw-r--r-- 1 root     root     1.1G Oct 27 03:12 uniref30_2202_db_seq.24
-rw-r--r-- 1 root     root     541M Oct 27 03:12 uniref30_2202_db_seq.25
-rw-r--r-- 1 root     root     376M Oct 27 03:12 uniref30_2202_db_seq.26
-rw-r--r-- 1 root     root     222M Oct 27 03:12 uniref30_2202_db_seq.27
-rw-r--r-- 1 root     root     1.1G Oct 27 03:12 uniref30_2202_db_seq.28
-rw-r--r-- 1 root     root     541M Oct 27 03:12 uniref30_2202_db_seq.29
-rw-r--r-- 1 root     root     222M Oct 27 03:12 uniref30_2202_db_seq.3
-rw-r--r-- 1 root     root     375M Oct 27 03:12 uniref30_2202_db_seq.30
-rw-r--r-- 1 root     root     222M Oct 27 03:12 uniref30_2202_db_seq.31
-rw-r--r-- 1 root     root     1.1G Oct 27 03:12 uniref30_2202_db_seq.32
-rw-r--r-- 1 root     root     542M Oct 27 03:12 uniref30_2202_db_seq.33
-rw-r--r-- 1 root     root     376M Oct 27 03:12 uniref30_2202_db_seq.34
-rw-r--r-- 1 root     root     222M Oct 27 03:12 uniref30_2202_db_seq.35
-rw-r--r-- 1 root     root     1.1G Oct 27 03:12 uniref30_2202_db_seq.36
-rw-r--r-- 1 root     root     542M Oct 27 03:12 uniref30_2202_db_seq.37
-rw-r--r-- 1 root     root     376M Oct 27 03:12 uniref30_2202_db_seq.38
-rw-r--r-- 1 root     root     222M Oct 27 03:12 uniref30_2202_db_seq.39
-rw-r--r-- 1 root     root     1.1G Oct 27 03:12 uniref30_2202_db_seq.4
-rw-r--r-- 1 root     root     1.1G Oct 27 03:12 uniref30_2202_db_seq.40
-rw-r--r-- 1 root     root     542M Oct 27 03:12 uniref30_2202_db_seq.41
-rw-r--r-- 1 root     root     376M Oct 27 03:12 uniref30_2202_db_seq.42
-rw-r--r-- 1 root     root     222M Oct 27 03:12 uniref30_2202_db_seq.43
-rw-r--r-- 1 root     root     1.1G Oct 27 03:12 uniref30_2202_db_seq.44
-rw-r--r-- 1 root     root     541M Oct 27 03:12 uniref30_2202_db_seq.45
-rw-r--r-- 1 root     root     376M Oct 27 03:12 uniref30_2202_db_seq.46
-rw-r--r-- 1 root     root     222M Oct 27 03:12 uniref30_2202_db_seq.47
-rw-r--r-- 1 root     root     1.1G Oct 27 03:12 uniref30_2202_db_seq.48
-rw-r--r-- 1 root     root     542M Oct 27 03:12 uniref30_2202_db_seq.49
-rw-r--r-- 1 root     root     541M Oct 27 03:12 uniref30_2202_db_seq.5
-rw-r--r-- 1 root     root     376M Oct 27 03:12 uniref30_2202_db_seq.50
-rw-r--r-- 1 root     root     222M Oct 27 03:12 uniref30_2202_db_seq.51
-rw-r--r-- 1 root     root     1.1G Oct 27 03:12 uniref30_2202_db_seq.52
-rw-r--r-- 1 root     root     542M Oct 27 03:12 uniref30_2202_db_seq.53
-rw-r--r-- 1 root     root     376M Oct 27 03:12 uniref30_2202_db_seq.54
-rw-r--r-- 1 root     root     222M Oct 27 03:12 uniref30_2202_db_seq.55
-rw-r--r-- 1 root     root     1.1G Oct 27 03:12 uniref30_2202_db_seq.56
-rw-r--r-- 1 root     root     541M Oct 27 03:12 uniref30_2202_db_seq.57
-rw-r--r-- 1 root     root     376M Oct 27 03:12 uniref30_2202_db_seq.58
-rw-r--r-- 1 root     root     222M Oct 27 03:12 uniref30_2202_db_seq.59
-rw-r--r-- 1 root     root     376M Oct 27 03:12 uniref30_2202_db_seq.6
-rw-r--r-- 1 root     root     1.1G Oct 27 03:12 uniref30_2202_db_seq.60
-rw-r--r-- 1 root     root     542M Oct 27 03:12 uniref30_2202_db_seq.61
-rw-r--r-- 1 root     root     376M Oct 27 03:12 uniref30_2202_db_seq.62
-rw-r--r-- 1 root     root     222M Oct 27 03:12 uniref30_2202_db_seq.63
-rw-r--r-- 1 root     root     1.1G Oct 27 03:12 uniref30_2202_db_seq.64
-rw-r--r-- 1 root     root     542M Oct 27 03:12 uniref30_2202_db_seq.65
-rw-r--r-- 1 root     root     376M Oct 27 03:12 uniref30_2202_db_seq.66
-rw-r--r-- 1 root     root     222M Oct 27 03:12 uniref30_2202_db_seq.67
-rw-r--r-- 1 root     root     1.1G Oct 27 03:12 uniref30_2202_db_seq.68
-rw-r--r-- 1 root     root     542M Oct 27 03:12 uniref30_2202_db_seq.69
-rw-r--r-- 1 root     root     222M Oct 27 03:12 uniref30_2202_db_seq.7
-rw-r--r-- 1 root     root     375M Oct 27 03:12 uniref30_2202_db_seq.70
-rw-r--r-- 1 root     root     222M Oct 27 03:12 uniref30_2202_db_seq.71
-rw-r--r-- 1 root     root     1.1G Oct 27 03:12 uniref30_2202_db_seq.72
-rw-r--r-- 1 root     root     542M Oct 27 03:12 uniref30_2202_db_seq.73
-rw-r--r-- 1 root     root     375M Oct 27 03:12 uniref30_2202_db_seq.74
-rw-r--r-- 1 root     root     222M Oct 27 03:12 uniref30_2202_db_seq.75
-rw-r--r-- 1 root     root     1.1G Oct 27 03:12 uniref30_2202_db_seq.76
-rw-r--r-- 1 root     root     542M Oct 27 03:12 uniref30_2202_db_seq.77
-rw-r--r-- 1 root     root     376M Oct 27 03:12 uniref30_2202_db_seq.78
-rw-r--r-- 1 root     root     222M Oct 27 03:12 uniref30_2202_db_seq.79
-rw-r--r-- 1 root     root     1.1G Oct 27 03:12 uniref30_2202_db_seq.8
-rw-r--r-- 1 root     root     1.1G Oct 27 03:12 uniref30_2202_db_seq.80
-rw-r--r-- 1 root     root     542M Oct 27 03:12 uniref30_2202_db_seq.81
-rw-r--r-- 1 root     root     376M Oct 27 03:12 uniref30_2202_db_seq.82
-rw-r--r-- 1 root     root     222M Oct 27 03:12 uniref30_2202_db_seq.83
-rw-r--r-- 1 root     root     1.1G Oct 27 03:12 uniref30_2202_db_seq.84
-rw-r--r-- 1 root     root     541M Oct 27 03:12 uniref30_2202_db_seq.85
-rw-r--r-- 1 root     root     376M Oct 27 03:12 uniref30_2202_db_seq.86
-rw-r--r-- 1 root     root     222M Oct 27 03:12 uniref30_2202_db_seq.87
-rw-r--r-- 1 root     root     1.1G Oct 27 03:12 uniref30_2202_db_seq.88
-rw-r--r-- 1 root     root     542M Oct 27 03:12 uniref30_2202_db_seq.89
-rw-r--r-- 1 root     root     542M Oct 27 03:12 uniref30_2202_db_seq.9
-rw-r--r-- 1 root     root     376M Oct 27 03:12 uniref30_2202_db_seq.90
-rw-r--r-- 1 root     root     222M Oct 27 03:12 uniref30_2202_db_seq.91
-rw-r--r-- 1 root     root     1.1G Oct 27 03:12 uniref30_2202_db_seq.92
-rw-r--r-- 1 root     root     541M Oct 27 03:12 uniref30_2202_db_seq.93
-rw-r--r-- 1 root     root     375M Oct 27 03:12 uniref30_2202_db_seq.94
-rw-r--r-- 1 root     root     222M Oct 27 03:12 uniref30_2202_db_seq.95
-rw-r--r-- 1 root     root     1.1G Oct 27 03:12 uniref30_2202_db_seq.96
-rw-r--r-- 1 root     root     542M Oct 27 03:12 uniref30_2202_db_seq.97
-rw-r--r-- 1 root     root     376M Oct 27 03:12 uniref30_2202_db_seq.98
-rw-r--r-- 1 root     root     222M Oct 27 03:12 uniref30_2202_db_seq.99
-rw-r--r-- 1 root     root        4 Oct 27 03:13 uniref30_2202_db_seq.dbtype
lrwxrwxrwx 1 root     root       18 Oct 27 03:14 uniref30_2202_db_seq_h -> uniref30_2202_db_h
lrwxrwxrwx 1 root     root       25 Oct 27 03:14 uniref30_2202_db_seq_h.dbtype -> uniref30_2202_db_h.dbtype
lrwxrwxrwx 1 root     root       24 Oct 27 03:14 uniref30_2202_db_seq_h.index -> uniref30_2202_db_h.index
-rw-r--r-- 1 root     root     7.3G Oct 27 03:13 uniref30_2202_db_seq.index
-rw-r--r-- 1 ec2-user ec2-user 620M Apr  1  2022 uniref30_2202_db_taxonomy
-rw------- 1   528745     9100 6.2G Jun  1 12:06 uniref30_2202_h.tsv
-rw------- 1   528745     9100 4.8G Jun  1 22:39 uniref30_2202_mapping.tsv
-rw------- 1   528745     9100  397 Jul 17 03:22 uniref30_2202.md5sum
-rw------- 1   528745     9100 112G Jun  1 13:28 uniref30_2202_seq.tsv
-rw-r--r-- 1 root     root      78G Oct 27 01:27 uniref30_2202.tar.gz
-rw------- 1   528745     9100 7.5G Jun  1 13:29 uniref30_2202.tsv
-rw-r--r-- 1 root     root        0 Oct 27 03:18 UNIREF30_READY

@xieqihui
Copy link

xieqihui commented Jan 6, 2023 •
edited

Have you found out any solution to this? I'm encoutering exactly the same issue. I'm using the latest release of mmseqs - MMseqs2 Release 14-7e284. I tried both uniref30_2202 and uniref30_2103, all have the same issue.

Attached is the output of ls -lha <databases>

colabfold_db_folder-2.txt

@milot-mirdita
Copy link
Member

I figured out what's going wrong here. We don't create the correct symlink for the taxonomic support files with precomputed index.

You should create these two symlinks (and also the same two for the colabfolddb).

ln -s uniref30_2202_db_mapping uniref30_2202_db.idx_mapping
ln -s uniref30_2202_db_taxonomy uniref30_2202_db.idx_taxonomy

@xieqihui
Copy link

I figured out what's going wrong here. We don't create the correct symlink for the taxonomic support files with precomputed index.

You should create these two symlinks (and also the same two for the colabfolddb).

ln -s uniref30_2202_db_mapping uniref30_2202_db.idx_mapping
ln -s uniref30_2202_db_taxonomy uniref30_2202_db.idx_taxonomy

Great, this works. Thanks a lot!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
4 participants
@milot-mirdita @athbaltzis @xieqihui @wosmanitx