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Why not use the -b argument to generate BRAW files? #36

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geqj opened this issue Apr 4, 2022 · 2 comments
Open

Why not use the -b argument to generate BRAW files? #36

geqj opened this issue Apr 4, 2022 · 2 comments

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@geqj
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geqj commented Apr 4, 2022

Hello, I have a question to ask you, when I used ccmpred example.mat -b example.braw command to generate braw file, there was an error. Error: unknown option b at argument index 22 So I can't generate my own BRAW file. But I see that your source code has the -b parameter.
#ifdef MSGPACK
printf("\t-b BRAWFLE\tStore raw prediction matrix in msgpack format in BRAWFLE\n");

May I ask what is the cause of this problem?
Any thoughts would be greatly appreciated! Thanks.

@mintuos
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mintuos commented Mar 9, 2023

me too
when I use this ./ccmpred -h, there are not -b options

Usage: ./ccmpred [options] input.aln output.mat
Options:
-n NUMITER Compute a maximum of NUMITER operations [default: 50]
-e EPSILON Set convergence criterion for minimum decrease in the last K iterations to EPSILON [default: 0.01]
-k LASTK Set K parameter for convergence criterion to LASTK [default: 5]

-i INIFILE	Read initial weights from INIFILE
-r RAWFILE	Store raw prediction matrix in RAWFILE

-w IDTHRES	Set sequence reweighting identity threshold to IDTHRES [default: 0.8]
-l LFACTOR	Set pairwise regularization coefficients to LFACTOR * (L-1) [default: 0.2]
-A        	Disable average product correction (APC)
-R        	Re-normalize output matrix to [0,1]
-h        	Display help

@ylx0925
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ylx0925 commented May 23, 2023

I have met this problem,and I installed it from the latest branch.If you solved the problem,can you teach me?

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