.travis.yml

language: python
python:
    - 3.5
sudo: required
dist: trusty

install:
    - pip install flake8

addons:
  apt:
    packages: &default_packages
    - cmake
    - libboost-dev

script:
  - mkdir build
  - cd build
  - cmake .. && make
  - export PATH="$PATH:$PWD/bin"
  - bin/BaMMmotif /tmp/ ../example/JunD.fasta --PWMFile ../example/PWM_peng10.meme --EM -k 0 --FDR --scoreSeqset --maxPWM 1

matrix:
  include:
    - compiler: gcc
      addons:
        apt:
          sources:
            - ubuntu-toolchain-r-test
          packages:
            - *default_packages
            - g++-4.9
      env: CXX=g++-4.9
    - compiler: gcc
      addons:
        apt:
          sources:
            - ubuntu-toolchain-r-test
          packages:
            - *default_packages
            - g++-5
      env: CXX=g++-5
    - compiler: gcc
      addons:
        apt:
          sources:
            - ubuntu-toolchain-r-test
          packages:
            - *default_packages
            - g++-6
      env: CXX=g++-6
    - compiler: gcc
      addons:
        apt:
          sources:
            - ubuntu-toolchain-r-test
          packages:
            - *default_packages
            - g++-7
      env: CXX=g++-7

    - compiler: clang
      addons:
        apt:
          sources:
            - ubuntu-toolchain-r-test
            - llvm-toolchain-trusty-3.6
          packages:
            - *default_packages
            - clang-3.6
            - util-linux
            - libc++-dev
      env: CXX=clang++-3.6 CXXFLAGS="-stdlib=libc++"
    - compiler: clang
      addons:
        apt:
          sources:
            - ubuntu-toolchain-r-test
            - llvm-toolchain-precise-3.7
          packages:
            - *default_packages
            - clang-3.7
            - util-linux
            - libc++-dev
      env: CXX=clang++-3.7 CXXFLAGS="-stdlib=libc++"
    - compiler: clang
      addons:
        apt:
          sources:
            - ubuntu-toolchain-r-test
            - llvm-toolchain-trusty-3.8
          packages:
            - *default_packages
            - clang-3.8
            - util-linux
            - libc++-dev
      env: CXX=clang++-3.8 CXXFLAGS="-stdlib=libc++"
    - compiler: clang
      addons:
        apt:
          sources:
            - ubuntu-toolchain-r-test
            - llvm-toolchain-trusty-3.9
          packages:
            - *default_packages
            - clang-3.9
            - util-linux
            - libc++-dev
      env: CXX=clang++-3.9 CXXFLAGS="-stdlib=libc++"

    - compiler: clang
      addons:
        apt:
          sources:
            - ubuntu-toolchain-r-test
            - llvm-toolchain-trusty-4.0
          packages:
            - *default_packages
            - util-linux
            - clang-4.0
            - libc++-dev
      env: CXX=clang++-4.0 CXXFLAGS="-stdlib=libc++"