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filtering error #44

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feilongzh opened this issue Feb 23, 2022 · 1 comment
Open

filtering error #44

feilongzh opened this issue Feb 23, 2022 · 1 comment

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@feilongzh
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(plasflow) [administrator@localhost ~]$ ./miniconda3/envs/plasflow/bin/filter_sequences_by_length.pl -input Citrobacter_freundii_strain_CAV1321_scaffolds.fasta -output firstplas.fasta
Can't locate Bio/SeqIO.pm in @inc (@inc contains: /usr/local/lib64/perl5 /usr/local/share/perl5 /usr/lib64/perl5/vendor_perl /usr/share/perl5/vendor_perl /usr/lib64/perl5 /usr/share/perl5 .) at ./miniconda3/envs/plasflow/bin/filter_sequences_by_length.pl line 24.
BEGIN failed--compilation aborted at ./miniconda3/envs/plasflow/bin/filter_sequences_by_length.pl line 24.

How to deal with it?Thanks
@Kyle-ssq
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export PERL5LIB=~/miniconda3/pkgs/perl-bioperl-1.6.924-4/lib/perl5/site_perl/5.22.0/:$PERL5LIB

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@Kyle-ssq @feilongzh