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run.sh
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run.sh
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#!/bin/bash
# 1.0, 2.0, 3.0, 4.0 --------------------------------------------------------#
for sim in 1.0 2.0 3.0 4.0
do
for ((i=0; i<3780; i++))
do
Rscript sim/simulation-X.0.0_step-1.R $sim.0 $i 50 output/$sim
done
for ((i=0; i<540; i++))
do
Rscript sim/simulation-X.0.1_step-1.R $sim.1 $i 200 output/$sim
done
Rscript output/combine_files.R output/$sim $sim.0 1
Rscript output/combine_files.R output/$sim $sim.1 1
for ((i=0; i<1050; i++))
do
Rscript sim/simulation-X.0.0_step-2.R $sim.0 $i 4 output/$sim
done
for ((i=0; i<480; i++))
do
Rscript sim/simulation-X.0.1_step-2.R $sim.1 $i 5 output/$sim
done
Rscript output/combine_files.R output/$sim $sim.0 2
Rscript output/combine_files.R output/$sim $sim.1 2
done
# 5.0.0, fiber features -----------------------------------------------------#
for ((i=0; i<3150; i++))
do
Rscript sim/dcis-ff-5.0.0_step-1.R $i 10 output/5.0 data/processed
done
Rscript output/combine_files.R output/5.0 5.0.0 1
for ((i=0; i<500; i++))
do
Rscript sim/dcis-ff-5.0.0_step-1.R $i 1 output/5.0 data/processed
done
Rscript output/combine_files.R output/5.0 5.0.0 2
for ((i=0; i<100; i++))
do
python sim/dcis-ff-5.0.3_step-1.py $i 1 output/5.0/ data/processed/
done
Rscript sim/dcis-ff-5.0.3_step-2.R output/5.0
for ((i=0; i<40; i++))
do
Rscript sim/dcis-ff-5.0.4_step-1.R $i 10 output/5.0 data/processed
done
Rscript output/combine_files.R output/5.0 5.0.4 1