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installation error #31

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amoltej opened this issue Nov 8, 2022 · 1 comment
Open

installation error #31

amoltej opened this issue Nov 8, 2022 · 1 comment

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@amoltej
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amoltej commented Nov 8, 2022

Hi,
I am seeing following error after running make test command

PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/00-load.t ........ 1/3 # Testing HMMER2GO 0.18.3, Perl 5.030000, /usr/bin/perl
t/00-load.t ........ ok
t/01-fetchmap.t .... ok
t/02-getorf.t ...... ok
t/03-run.t ......... ok
t/04-mapterms.t .... ok
t/05-map2gaf.t ..... ok
t/06-pfamsearch.t .. 2/10
# Failed test 'Found the correct number of HMMs for the search term
# at t/06-pfamsearch.t line 40.
# got: undef
# expected: '103'

# Failed test 'Found the HMMs in the correct number of databases'
# at t/06-pfamsearch.t line 41.
# got: undef
# expected: '4'

# Failed test 'Output file of descriptions produced
# at t/06-pfamsearch.t line 43.
Can't open 't/hmmer2go_test_termsearch.out' for reading: 'No such file or directory' at t/06-pfamsearch.t line 46
# Looks like your test exited with 255 just after 4.
t/06-pfamsearch.t .. Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 9/10 subtests
t/07-customdb.t .... 2/5
# Failed test 'Expected HMM database created
# at t/07-customdb.t line 30.

# Failed test 'Expected raw output of HMMscan from hmmer2go search
# at t/07-customdb.t line 35.

# Failed test 'Expected domain table output of HMMscan from hmmer2go search
# at t/07-customdb.t line 36.

# Failed test 'Expected hit table output of HMMscan from hmmer2go search
# at t/07-customdb.t line 37.
# Looks like you failed 4 tests of 5.
t/07-customdb.t .... Dubious, test returned 4 (wstat 1024, 0x400)
Failed 4/5 subtests

Test Summary Report
-------------------
t/06-pfamsearch.t (Wstat: 65280 Tests: 4 Failed: 3)
Failed tests: 2-4
Non-zero exit status: 255
Parse errors: Bad plan. You planned 10 tests but ran 4.
t/07-customdb.t (Wstat: 1024 Tests: 5 Failed: 4)
Failed tests: 2-5
Non-zero exit status: 4
Files=8, Tests=54, 30 wallclock secs ( 0.04 usr 0.02 sys + 10.75 cusr 5.54 csys = 16.35 CPU)
Result: FAIL
Failed 2/8 test programs. 7/54 subtests failed.
make: *** [Makefile:900: test_dynamic] Error 4

can someone please explain how to resolve this issue?

Thanks
Amol

@LeandroD94
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Hi! I'm experiencing the same error and I can't solve it.
NB: I needed to download and configure the bins instead of the docker image...

Thanks,
Leandro

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