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P.S. Is there any workaround in the current seqan3 release, that would allow preserving pb: header tags? We're writing a tool that adds tags to bam records, and it should make no other change to the bam file, but right now it also ends up stripping pb: header tags. Thanks for help! @eseiler
Does this problem persist on the current main?
Is there an existing issue for this?
Current Behavior
Currently, unknown tags in SAM headers are getting silently stripped from files.
Expected Behavior
Given that the SAM format permits user-defined tags, it would be better to pass them unchanged from input to output.
Steps To Reproduce
Try with the pb: tag mentioned in #3215
Environment
SeqAn version: 3.3.0 Operating system: Linux bpb23-acc 5.4.0-136-generic #153-Ubuntu SMP Thu Nov 24 15:56:58 UTC 2022 x86_64 x86_64 x86_64 GNU/Linux Compiler: x86_64-conda-linux-gnu-c++ (conda-forge gcc 12.3.0-2) 12.3.0
Anything else?
No response
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