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function 'strsplit': object 'GE' not found #375
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same issue here with both 2.9.7c or 2.9.7e coupled with R 4.1.3 or 4.2.2, STAR 2.7.10a, samtools 1.15.1. also read the commits history, but find any clues like which commit version should work. |
@brainfo I checked this error in scripts. It appears to be related to the absence of the 'GE' object in the "UMIstuffFUN.R" script. I'm unsure about the meaning of the 'GE' object within the '.makewide' function in this script. |
Hi, I think this is related to using a very current R version. |
Describe the bug
Very useful package. I used my own conda environment (R verison 4.3.1) and met this problem below:
Error in h(simpleError(msg, call)) :
error in evaluating the argument 'x' in selecting a method for function 'strsplit': object 'GE' not found
Calls: convert2countM ... .makewide -> unlist -> strsplit -> .handleSimpleError -> h
Execution halted
To Reproduce
Screenshots
**Session information
samtools 1.17
STAR 2.7.11a
R 4.3.1
pigz 2.6
Additional context
Add any other context about the problem here.
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