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Extracted cropped spot images #820

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KSimi7 opened this issue Apr 18, 2024 · 1 comment
Open

Extracted cropped spot images #820

KSimi7 opened this issue Apr 18, 2024 · 1 comment
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@KSimi7
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KSimi7 commented Apr 18, 2024

Hi!

Thank you for developing this package. Is there any way I can export the cropped spot images as a numpy arrays or individual images?
I look forward to hearing from you!

@giovp
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giovp commented Apr 22, 2024

hi, thank youf ro your interest in squidpy, what do you mean "export the cropped spot as numpy arrays"? with the function generate_spot_crops you should be able to do just that, as it returns a generator with cropped tiles at the centroid coordinates of the visium array.

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