Using squidpy.pl.spatial_segment on Xenium data

[justinesjw]

Hi,

Thanks for building Squidpy!

May I know how to implement squidpy.pl.spatial_segment on Xenium data? I might have missed it, but I could not find it in any tutorial.

This is the code that I am using
sq.pl.spatial_segment( adata, seg_cell_id="cell_id", crop_coord=[(0, 0, 200, 200)] )

and I get this error.

I've tried substituting library_id with some parameters I can find in the adata, but I can't seem to fix this.

Thanks!

Best,
Justine