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EuroPython talk that can give feature insights to SquidPy #800

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inaciomdrs opened this issue Feb 15, 2024 · 2 comments
Open

EuroPython talk that can give feature insights to SquidPy #800

inaciomdrs opened this issue Feb 15, 2024 · 2 comments

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@inaciomdrs
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I am watching this talk from EuroPython 2023. I believe that use cases shown there could be adapted to SquidPy. For example, make interactive scatter plots in which when user hovers over a specific spot, he/she/they can inspect the expression of a (or a set of) gene, or even the "expression/regulation level" of a pathway.

@giovp
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giovp commented Feb 15, 2024

hi @inaciomdrs , this is super interesting! I think @timtreis and @Sonja-Stockhaus are looking into datashader backend for https://github.com/scverse/spatialdata-plot , but I'm not sure about the interactivity.

cc @LucaMarconato

@inaciomdrs
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Nice, that's good. In fact, datashader plots kinda already come with interactivity (at least the ones shown in the presentation).

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