Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Analysing 3D data #788

Open
2 tasks
timtreis opened this issue Jan 8, 2024 · 0 comments
Open
2 tasks

Analysing 3D data #788

timtreis opened this issue Jan 8, 2024 · 0 comments
Labels
squidpy2.0 Everything releated to a Squidpy 2.0 release workstream Major workstreams for the Squidpy 2.0 release

Comments

@timtreis
Copy link
Member

timtreis commented Jan 8, 2024

A future extension of the commonly 2D spatial data would be to include "layered" 2.5D data which can then be analysed in 3D. spatialdata already allows for storing it, however, the analysis tools to match this are missing from squidpy. We aim to include these in future releases.

Short-term goals:

  • Getting mouse 3D from @abid-abrar into spatialdata and assess which methods could be needed
  • Trying to visualise Abids from spatialdata, maybe vitessc/napari
@timtreis timtreis added squidpy2.0 Everything releated to a Squidpy 2.0 release workstream Major workstreams for the Squidpy 2.0 release labels Jan 8, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
squidpy2.0 Everything releated to a Squidpy 2.0 release workstream Major workstreams for the Squidpy 2.0 release
Projects
None yet
Development

No branches or pull requests

1 participant