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.pre-commit-config.yaml
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.pre-commit-config.yaml
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fail_fast: false
default_language_version:
python: python3
default_stages:
- commit
- push
minimum_pre_commit_version: 2.9.3
repos:
- repo: https://github.com/pre-commit/mirrors-mypy
rev: v1.10.0
hooks:
- id: mypy
additional_dependencies: [numpy, pandas, types-requests]
exclude: .scripts/ci/download_data.py|squidpy/datasets/_(dataset|image).py # See https://github.com/pre-commit/mirrors-mypy/issues/33
- repo: https://github.com/pre-commit/mirrors-prettier
rev: v4.0.0-alpha.8
hooks:
- id: prettier
- repo: https://github.com/pre-commit/pre-commit-hooks
rev: v4.6.0
hooks:
- id: detect-private-key
- id: check-merge-conflict
- id: check-ast
- id: check-symlinks
- id: check-added-large-files
- id: check-executables-have-shebangs
- id: fix-encoding-pragma
args: [--remove]
- id: end-of-file-fixer
- id: mixed-line-ending
args: [--fix=lf]
- id: trailing-whitespace
exclude: ^.bumpversion.cfg$
- id: name-tests-test
args: [--django]
- id: check-case-conflict
- id: check-docstring-first
- id: check-yaml
- id: check-toml
- id: requirements-txt-fixer
- repo: https://github.com/jumanjihouse/pre-commit-hooks
rev: 3.0.0
hooks:
- id: script-must-have-extension
name: Check executable files use .sh extension
types: [shell, executable]
- repo: https://github.com/astral-sh/ruff-pre-commit
rev: v0.4.5
hooks:
- id: ruff
types_or: [python, pyi, jupyter]
args: [--fix, --exit-non-zero-on-fix]
- id: ruff-format
types_or: [python, pyi, jupyter]
- repo: https://github.com/pre-commit/pygrep-hooks
rev: v1.10.0
hooks:
- id: python-no-eval
- id: python-use-type-annotations
- id: python-check-blanket-noqa
- id: rst-backticks
- id: rst-directive-colons
- id: rst-inline-touching-normal