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Could scVI models support weighed loss and weighing individual cells or batch_key groups?
Some potential uses
Downweighing over-represented atlases with low interesting variation.
Improving ELBO on poorly represented subsets of interest i.e. rare cell types or small samples.
Comments
To my knowledge, oversampling/undersampling is not a viable solution here because scvi-tools requires in-memory AnnData objects containing the entire dataset. Is there any way to "stream" data loading with meaningful oversampling that does not require holding all oversampled entries in memory for the entirety of training?
The text was updated successfully, but these errors were encountered:
Could scVI models support weighed loss and weighing individual cells or batch_key groups?
Some potential uses
Comments
To my knowledge, oversampling/undersampling is not a viable solution here because scvi-tools requires in-memory AnnData objects containing the entire dataset. Is there any way to "stream" data loading with meaningful oversampling that does not require holding all oversampled entries in memory for the entirety of training?
The text was updated successfully, but these errors were encountered: