AttributeError: module 'numpy' has no attribute 'str

[sainsachiko]

Get AttributeError: module 'numpy' has no attribute 'str' when trying to load pbmc data

adata = scvi.data.pbmc_dataset()

INFO     File data/gene_info_pbmc.csv already downloaded                                                           
INFO     File data/pbmc_metadata.pickle already downloaded                                                         
INFO     File data/pbmc8k/filtered_gene_bc_matrices.tar.gz already downloaded                                      
INFO     Extracting tar file                                                                                       
INFO     Removing extracted data at data/pbmc8k/filtered_gene_bc_matrices                                          
INFO     File data/pbmc4k/filtered_gene_bc_matrices.tar.gz already downloaded                                      
INFO     Extracting tar file                                                                                       
INFO     Removing extracted data at data/pbmc4k/filtered_gene_bc_matrices                                          
---------------------------------------------------------------------------
AttributeError                            Traceback (most recent call last)
[<ipython-input-9-2b688d4bab92>](https://localhost:8080/#) in <cell line: 1>()
      1 if dataset_name == "PBMC_10K":
----> 2     adata = scvi.data.pbmc_dataset()  # 11990 × 3346
      3     ori_batch_col = "batch"
      4     adata.obs["celltype"] = adata.obs["str_labels"].astype("category")
      5     adata.var = adata.var.set_index("gene_symbols")

2 frames
[/usr/local/lib/python3.10/dist-packages/numpy/__init__.py](https://localhost:8080/#) in __getattr__(attr)
    317             # And future warnings for those that will change, but also give
    318             # the AttributeError
--> 319             warnings.warn(
    320                 f"In the future `np.{attr}` will be defined as the "
    321                 "corresponding NumPy scalar.", FutureWarning, stacklevel=2)

AttributeError: module 'numpy' has no attribute 'str'.
`np.str` was a deprecated alias for the builtin `str`. To avoid this error in existing code, use `str` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.str_` here.
The aliases was originally deprecated in NumPy 1.20; for more details and guidance see the original release note at:
    https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations```

#### Versions:
1.16.4

[martinkim0]

Hi, could you double check what scvi-tools version you have installed and let me know? Our latest release is 1.1.2. Thanks!