Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Tutorial to read in 10 vcfs and calculate allele frequency? #70

Open
dbolser opened this issue Mar 5, 2024 · 0 comments
Open

Tutorial to read in 10 vcfs and calculate allele frequency? #70

dbolser opened this issue Mar 5, 2024 · 0 comments

Comments

@dbolser
Copy link

dbolser commented Mar 5, 2024

Hi, I have 10 vcfs, each with multiple samples. Can I read them all in (in parallel) and make a single pandas data frame from all variants x samples?

What do I call to get allele frequency per variant?

Many thanks!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant