Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Multi: Syntax errors in the examples #357

Open
sbmlsecretary opened this issue Jan 14, 2019 · 4 comments
Open

Multi: Syntax errors in the examples #357

sbmlsecretary opened this issue Jan 14, 2019 · 4 comments

Comments

@sbmlsecretary
Copy link
Contributor

Section "4.3 A BioNetGen example from its user manual" of the multi specification (Version 1 Release 1, 18/03/2017), there are several syntax errors in the included SBML:

  • the listOfSpeciesTypeInstances contain only some component elements instead of speciesTypeInstance elements.
  • the listOfInitialAssignments has a spelling mistake, the math namespace is not correctly written in the initialAssignment elements (the XML attribute is xmls instead of xmlns)
  • the attribute identifyingParent on speciesTypeComponentIndex is missing the namespace declaration.

Reported by: niko-rodrigue

Original Ticket: sbml/sbml-specifications//359

@sbmlsecretary
Copy link
Contributor Author

Initial report was done by Piotr Gawron in sbmlteam/jsbml#159

Original comment by: niko-rodrigue

@sbmlsecretary
Copy link
Contributor Author

Thanks for the report! I will have the example updated at the next release of SBML-Multi spec.

Original comment by: zhangfen

@sbmlsecretary
Copy link
Contributor Author

  • summary: Syntax errors in the examples --> Multi: Syntax errors in the examples

Original comment by: luciansmith

@sbmlsecretary
Copy link
Contributor Author

  • assigned_to: Fengkai Zhang

Original comment by: luciansmith

@sbmlsecretary sbmlsecretary self-assigned this Mar 15, 2022
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

No branches or pull requests

2 participants