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A questio about LoadVizgen #7588
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I can't find the right way to slove it |
what kind of output do you have from Vizgen? If it's a new output that has
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By default the function looks for segmentation, so if you do not have any it'll give you that error. Based on not the screenshot you don't have segmentation data for Seurat to access, so you should pass in the argument |
I can confirm that, if segmentation data is not provided, and even if the |
hi,
I analyzed s2r1 dataset was produced using the Vizgen MERSCOPE system, but got error
Warning in ReadVizgen(data.dir = data.dir, filter = "^Blank-", type = c("centroids", :
Cannot find hdf5r; unable to load segmentation vertices
Error in UseMethod(generic = "CreateSegmentation", object = coords) :
no applicable method for 'CreateSegmentation' applied to an object of class "NULL"
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