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I am trying to use FindTransferAnchors for label transfer. I normalized my scRNAseq data using LogNormalize and got the reference for cell labeling from Azimuth.
I used the following codes in R to transfer labels:
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I am trying to use
FindTransferAnchors
for label transfer. I normalized my scRNAseq data usingLogNormalize
and got the reference for celllabeling
fromAzimuth
.I used the following codes in
R
to transfer labels:when I run the last command I will get this error:
Error: An SCT assay (refAssay) was provided for reference.assay but normalization.method was set as LogNormalize.
do you know how I can solve the problem?
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