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Not able to convert loom to seurat #172

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millerkaplanlab opened this issue Nov 21, 2023 · 4 comments
Open

Not able to convert loom to seurat #172

millerkaplanlab opened this issue Nov 21, 2023 · 4 comments

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@millerkaplanlab
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Hello. I used velocyto to generate the loom file required to RNA Velocity using seurat wrappers. I am unable to convert the loom object to Seurat as shown in the tutorial. I get the following error. Any help would be appreciated.

P7loom <- as.Seurat(x = loom.data)
| | 0%Error in validObject(.Object) :
invalid class “LogMap” object: Duplicate rownames not allowed
@FlyingFa
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Similar problem, did you figure out ?

@jcy258
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jcy258 commented Jan 8, 2024

Same problem!

@jwtobias
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Please add me to the list. Same function, same error.

@TaoBern
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TaoBern commented May 15, 2024

same as me , does anyone solve it?

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@millerkaplanlab @jwtobias @jcy258 @FlyingFa @TaoBern