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Found canu but couldn't get version. (canu 2.2) #178

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ppflrs opened this issue Feb 3, 2022 · 2 comments
Open

Found canu but couldn't get version. (canu 2.2) #178

ppflrs opened this issue Feb 3, 2022 · 2 comments

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@ppflrs
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ppflrs commented Feb 3, 2022

If someone using circlator 1.5.5 and canu 2.2 encounters the error:

'Found canu but couldn't get version'

The fix is to change the following line in external_progs.py:

'canu': ('-version', re.compile(r'^Canu \D*([\d][\d\.]+)')),

for

'canu': ('-version', re.compile(r'^canu \D*([\d][\d\.]+)')),
@yisuo1994
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Here is my solution:

Install the specified version of Canu by “mamba install canu=1.5”.

@nblouin
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nblouin commented Feb 21, 2024

I got around this by commenting out the problem in assemble.py. See this issue below.

#149

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3 participants