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example output files #81

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dpuiu0 opened this issue Oct 19, 2023 · 1 comment
Open

example output files #81

dpuiu0 opened this issue Oct 19, 2023 · 1 comment

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@dpuiu0
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dpuiu0 commented Oct 19, 2023

Hello,

I was wondering if you could make available on GitHub the GTF files generated by Finder when run on the "example" dataset?
Both the "final_GTF_files/ *.gtf" and "assemblies_psiclass_modified/*gtf" files would be useful.

I have run Finder on the "example" dataset and I would like to compare my results to the ones you got.

The number of CDS features in my "final_GTF_files/FINDER_BRAKER_PROT.gtf " is quite low.
"assemblies_psiclass_modified/proteins_for_alignment.gtf" is empty , while "final_GTF_files/combined_redundant_transcripts_removed.gtf" contains no CDS features.

Regards,
Daniela Puiu

@dpuiu
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dpuiu commented Oct 26, 2023

Hello, I was wondering if you received the message I sent last week?
I would greatly appreciate your sharing your results so I could confirm nothing went wrong with my run.

Thank you!

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