You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
I've been trying to use liana to compare cell-cell communication within my dataset of three conditions. And I was wondering how are the frequency of interactions calculated?
If I subset my Seurat into the different conditions and run the liana pipeline for each would the frequency heatmaps be comparable between conditions (even if for example I have a different number of cells in one condition)?
Thank you!
The text was updated successfully, but these errors were encountered:
Hi @Carolina-Toste, apologies for the delayed response. I only noticed the issue now.
The frequency is quite simpe, it just counts the number of ~significant interactions. For comparisons between conditions I would recommend trying out one protocol with Tensor-cell2cell: https://github.com/saezlab/ccc_protocols
Hi, thank you so much for such a great package.
I've been trying to use liana to compare cell-cell communication within my dataset of three conditions. And I was wondering how are the frequency of interactions calculated?
If I subset my Seurat into the different conditions and run the liana pipeline for each would the frequency heatmaps be comparable between conditions (even if for example I have a different number of cells in one condition)?
Thank you!
The text was updated successfully, but these errors were encountered: