You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Thanks for sharing this great package. I was trying to use liana to analyze my data, which was a SingleCellExperiment object that I have been using for a while.
When I tried to use liana_wrap directly, I found the following error:
But it turned out that the reason that it was crashing was in the line S4Vectors::subset.Vector(sce, select = colLabels(sce) == subject) because I had a subject column in my colData. After changing the name of the column it worked fine, so I thought to let you know about this error because it can be easily addressed in the liana_prep function.
Thanks again, Rene
The text was updated successfully, but these errors were encountered:
Hello,
Thanks for sharing this great package. I was trying to use liana to analyze my data, which was a
SingleCellExperiment
object that I have been using for a while.When I tried to use
liana_wrap
directly, I found the following error:which wasn't really informative, using rlang::last_trace didn't revealed a lot either at first glance:
But it turned out that the reason that it was crashing was in the line
S4Vectors::subset.Vector(sce, select = colLabels(sce) == subject)
because I had asubject
column in mycolData
. After changing the name of the column it worked fine, so I thought to let you know about this error because it can be easily addressed in theliana_prep
function.Thanks again, Rene
The text was updated successfully, but these errors were encountered: