Error in installation

[rstorch01]

I am trying to install liana in R/4.0.2 using remotes::install_github("saezlab/liana")

The installation fails with: Error: object ‘homologene_download’ is not exported by 'namespace:OmnipathR'
Execution halted

I had previous installed OmnipathR using Biocmanager::install("OmnipathR"). Please let me know how I can resolve this issue.

[dbdimitrov]

Hi @rstorch01,

Can you try installing OmnipathR also from Github? This should resolve it. Let me know if it doesn't.

Daniel

[rstorch01]

The install did not work:

• installing source package ‘OmnipathR’ ...
  ** using staged installation
  ** R
  ** inst
  ** byte-compile and prepare package for lazy loading
  Error: object ‘join_by’ is not exported by 'namespace:dplyr'
  Execution halted
  ERROR: lazy loading failed for package ‘OmnipathR’
• removing ‘/usr/local/R/4.0.2/lib64/R/library/OmnipathR’
• restoring previous ‘/usr/local/R/4.0.2/lib64/R/library/OmnipathR’
  Warning message:
  In i.p(...) :
  installation of package ‘/tmp/Rtmpcg2EQa/file618330fc912b/OmnipathR_3.9.6.tar.gz’ had non-zero exit status

[dbdimitrov]

Hmm, this seems like an OmniPathR issue @deeenes 🙏