/
DESCRIPTION
65 lines (65 loc) · 2.05 KB
/
DESCRIPTION
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
Package: dorothea
Type: Package
Title: Collection Of Human And Mouse TF Regulons
Version: 1.7.4
Authors@R: c(
person(given = "Pau",
family = "Badia-i-Mompel",
role = c("cre"),
email = "pau.badia@uni-heidelberg.de",
comment = c(ORCID = "0000-0002-1004-3923")),
person(given = "Daniel",
family = "Dimitrov",
role = c("aut"),
email = "daniel.dimitrov@uni-heidelberg.de",
comment = c(ORCID = "0000-0002-5197-2112")),
person(given = "Christian H.",
family = "Holland",
role = c("aut"),
email = "cholland2408@gmail.com",
comment = c(ORCID = "0000-0002-3060-5786")),
person(given = "Luz",
family = "Garcia-Alonso",
role = "aut"),
person(given = "Alberto",
family = "Valdeolivas",
role = "ctb"),
person(given = "Minoo",
family = "Ashtiani",
role = "ctb"),
person(given = "Attila",
family = "Gabor",
role = "ctb")
)
Description: DoRothEA is a gene regulatory network containing signed transcription factor (TF) - target gene interactions. DoRothEA regulons, the collection of a TF and its transcriptional targets, were curated and collected from different types of evidence for both human and mouse. A confidence level was assigned to each TF-target interaction based on the number of supporting evidence.
URL: https://saezlab.github.io/dorothea/, https://github.com/saezlab/dorothea
BugReports: https://github.com/saezlab/dorothea/issues
Depends: R (>= 4.0)
License: GPL-3 + file LICENSE
Encoding: UTF-8
LazyData: true
LazyDataCompression: xz
RoxygenNote: 7.2.3
VignetteBuilder: knitr
biocViews: ExperimentData, Homo_sapiens_Data, Mus_musculus_Data
Imports:
dplyr,
magrittr,
bcellViper,
decoupleR,
Suggests:
Biobase,
BiocStyle,
OmnipathR,
viper,
knitr,
pheatmap,
pkgdown,
rmarkdown,
Seurat,
SingleCellExperiment,
SummarizedExperiment,
testthat (>= 2.1.0),
tibble,
tidyr,
utils