Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

GSVA error #125

Open
victorcat4 opened this issue Apr 25, 2024 · 1 comment
Open

GSVA error #125

victorcat4 opened this issue Apr 25, 2024 · 1 comment
Assignees

Comments

@victorcat4
Copy link

Hello,

I'm facing some issue using GSVA. Any ideas ?

> library(decoupleR)
> data <- get_toy_data()
> mat <- data$mat
> network <- data$network
> run_gsva(
+   mat, 
+   net, 
+   .source='source', 
+   .target='target',
+   verbose = FALSE)

Erreur dans value[[3L]](cond) : 
  No such method in GSVA: `gsva`. To learn more check ?gsva.No such method in GSVA: `plage`. To learn more check ?gsva.No such method in GSVA: `ssgsea`. To learn more check ?gsva.No such method in GSVA: `zscore`. To learn more check ?gsva.
@PauBadiaM
Copy link
Collaborator

Hi @victorcat4,

Could you provide which package versions you have for both decoupleR and GSVA? In any case, try installing the latest versions for both.

@PauBadiaM PauBadiaM self-assigned this Apr 29, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants