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DESCRIPTION
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DESCRIPTION
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Package: MetaProViz
Title: METabolomics pre-PRocessing, functiOnal analysis and VIZualisation
Version: 2.0.1
Authors@R: c(
person("Christina", "Schmidt", , "christina.schmidt@uni-heidelberg.de", role = c("aut", "cre"),
comment = c(ORCID = "0000-0002-3867-0881")),
person("Dimitrios", "Prymidis", role = "aut"),
person("Julio", "Saez-Rodriguez", role = "aut",
comment = c(ORCID = "0000-0002-8552-8976")),
person("Christian", "Frezza", role = "aut",
comment = c(ORCID = "0000-0002-3293-7397"))
)
Description: MetaProViz can analyse standard metabolomics and
exometabolomics data (CoRe).It performs pre-processing including
feature filtering, missimg value imputation, normalisation and outlier
detection. It perform functional analysis including differential
metabolite analysis (DMA), clustering based on regulatory rules (MCA)
and contains different visualisation methods to extract biological
interpretable graphs and saves them in a publication ready format.
License: GPL-3 + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1
Imports:
BiocManager,
factoextra,
ggfortify,
ggplot2,
ggupset,
gridExtra,
gtools,
hash,
inflection,
patchwork,
pheatmap,
qcc,
reshape,
tidyverse,
writexl