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0_robustness_model.html
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<!DOCTYPE html>
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<a class="navbar-brand" href="index.html">Fertility diary</a>
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<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r">if (diary %>%<span class="st"> </span><span class="kw">select</span>( <span class="kw">one_of</span>(outcome) ) %>%<span class="st"> </span><span class="kw">summarise_each</span>(<span class="st">"unique"</span>) %>%<span class="st"> </span><span class="kw">na.omit</span>() %>%<span class="st"> </span><span class="kw">nrow</span>() ==<span class="st"> </span><span class="dv">2</span>) {
models[[outcome]] =<span class="st"> </span><span class="kw">glmer</span>(<span class="kw">as.formula</span>(<span class="kw">paste</span>(outcome, <span class="st">" ~ menstruation + included * fertile + fertile_mean + (1|person)"</span>)), <span class="dt">data =</span> diary, <span class="dt">family =</span> <span class="st">'binomial'</span>)
} else {
models[[outcome]] =<span class="st"> </span><span class="kw">lmer</span>(<span class="kw">as.formula</span>(<span class="kw">paste</span>(outcome, <span class="st">" ~ menstruation + included * fertile + fertile_mean + (1|person)"</span>)), <span class="dt">data =</span> diary)
}</code></pre></div>
<pre><code>## Error in eval(expr, envir, enclos): could not find function "%>%"</code></pre>
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r">models[[outcome]] =<span class="st"> </span><span class="kw">calculate_effects</span>(models[[outcome]])</code></pre></div>
<pre><code>## Error in eval(expr, envir, enclos): could not find function "calculate_effects"</code></pre>
<div id="model-summary" class="section level3 tab-content">
<h3>Model summary</h3>
<div id="basic-model" class="section level4">
<h4>Basic model</h4>
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r">models[[outcome]] %>%<span class="st"> </span>
<span class="st"> </span><span class="kw">print_summary</span>() %>%
<span class="st"> </span><span class="kw">plot_all_effects</span>()</code></pre></div>
<pre><code>## Error in eval(expr, envir, enclos): could not find function "%>%"</code></pre>
</div>
<div id="add-random-effect-for-fertile" class="section level4">
<h4>Add random effect for fertile</h4>
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r">models[[outcome]] %>%<span class="st"> </span>
<span class="st"> </span><span class="kw">add_ind_diff</span>()</code></pre></div>
<pre><code>## Error in eval(expr, envir, enclos): could not find function "%>%"</code></pre>
</div>
<div id="diagnostics" class="section level4">
<h4>Diagnostics</h4>
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r">models[[outcome]] %>%<span class="st"> </span>
<span class="st"> </span><span class="kw">plot_outcome</span>() %>%
<span class="st"> </span><span class="kw">print_diagnostics</span>()</code></pre></div>
<pre><code>## Error in eval(expr, envir, enclos): could not find function "%>%"</code></pre>
</div>
</div>
<div id="curve" class="section level3 tab-content">
<h3>Curve</h3>
<div id="backward-counted-cycle-length-21-36" class="section level4 tab-content">
<h4>Backward-counted, cycle length 21-36</h4>
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r">models[[outcome]] %>%<span class="st"> </span>
<span class="st"> </span><span class="kw">plot_curve</span>(diary %>%<span class="st"> </span><span class="kw">filter</span>(minimum_cycle_length_diary <=<span class="st"> </span><span class="dv">36</span>, minimum_cycle_length_diary ><span class="st"> </span><span class="dv">20</span>) %>%<span class="st"> </span><span class="kw">mutate</span>(<span class="dt">fertile=</span>prc_stirn_b))</code></pre></div>
<pre><code>## Error in eval(expr, envir, enclos): could not find function "%>%"</code></pre>
</div>
<div id="forward-counted-cycle-length-21-36" class="section level4 tab-content">
<h4>Forward-counted, cycle length 21-36</h4>
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r">models[[outcome]] %>%<span class="st"> </span>
<span class="st"> </span><span class="kw">plot_curve</span>(diary %>%<span class="st"> </span><span class="kw">filter</span>(minimum_cycle_length_diary <=<span class="st"> </span><span class="dv">36</span>, minimum_cycle_length_diary ><span class="st"> </span><span class="dv">20</span>) %>%<span class="st"> </span><span class="kw">mutate</span>(<span class="dt">RCD =</span> FCD, <span class="dt">fertile =</span> prc_stirn_b_forward_counted), <span class="dt">caption_x =</span> <span class="st">"Days since last menstruation"</span>)</code></pre></div>
<pre><code>## Error in eval(expr, envir, enclos): could not find function "%>%"</code></pre>
</div>
<div id="backward-counted-cycle-length-27-29" class="section level4 tab-content">
<h4>Backward-counted, cycle length 27-29</h4>
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r">models[[outcome]] %>%<span class="st"> </span>
<span class="st"> </span><span class="kw">plot_curve</span>(diary %>%<span class="st"> </span><span class="kw">filter</span>(minimum_cycle_length_diary <=<span class="st"> </span><span class="dv">29</span>, minimum_cycle_length_diary >=<span class="st"> </span><span class="dv">27</span>) %>%<span class="st"> </span><span class="kw">mutate</span>(<span class="dt">fertile=</span>prc_stirn_b))</code></pre></div>
<pre><code>## Error in eval(expr, envir, enclos): could not find function "%>%"</code></pre>
</div>
<div id="forward-counted-cycle-length-21-36-1" class="section level4 tab-content">
<h4>Forward-counted, cycle length 21-36</h4>
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r">models[[outcome]] %>%<span class="st"> </span>
<span class="st"> </span><span class="kw">plot_curve</span>(diary %>%<span class="st"> </span><span class="kw">filter</span>(minimum_cycle_length_diary <=<span class="st"> </span><span class="dv">29</span>, minimum_cycle_length_diary >=<span class="st"> </span><span class="dv">27</span>) %>%<span class="st"> </span><span class="kw">mutate</span>(<span class="dt">RCD =</span> FCD, <span class="dt">fertile =</span> prc_stirn_b_forward_counted), <span class="dt">caption_x =</span> <span class="st">"Days since last menstruation"</span>)</code></pre></div>
<pre><code>## Error in eval(expr, envir, enclos): could not find function "%>%"</code></pre>
</div>
</div>
<div id="robustness-checks" class="section level3 tab-content">
<h3>Robustness checks</h3>
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r">models[[outcome]] %>%<span class="st"> </span>
<span class="st"> </span><span class="kw">robustness_check_ovu_shift</span>(diary)</code></pre></div>
<pre><code>## Error in eval(expr, envir, enclos): could not find function "%>%"</code></pre>
<div id="moderation-by-participant-age" class="section level4">
<h4>Moderation by participant age</h4>
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r">models[[outcome]] %>%<span class="st"> </span>
<span class="st"> </span><span class="kw">test_moderator</span>(<span class="st">"age_group"</span>, diary, <span class="dt">xlevels =</span> <span class="dv">6</span>)</code></pre></div>
<pre><code>## Error in eval(expr, envir, enclos): could not find function "%>%"</code></pre>
</div>
<div id="moderation-by-weekend" class="section level4">
<h4>Moderation by weekend</h4>
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r">models[[outcome]] %>%<span class="st"> </span>
<span class="st"> </span><span class="kw">test_moderator</span>(<span class="st">"weekend"</span>, diary, <span class="dt">xlevels =</span> <span class="dv">2</span>) </code></pre></div>
<pre><code>## Error in eval(expr, envir, enclos): could not find function "%>%"</code></pre>
</div>
<div id="moderation-by-weekday" class="section level4">
<h4>Moderation by weekday</h4>
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r">models[[outcome]] %>%<span class="st"> </span>
<span class="st"> </span><span class="kw">test_moderator</span>(<span class="st">"weekday"</span>, diary, <span class="dt">xlevels =</span> <span class="dv">7</span>)</code></pre></div>
<pre><code>## Error in eval(expr, envir, enclos): could not find function "%>%"</code></pre>
</div>
<div id="moderation-by-exclusion-threshold" class="section level4">
<h4>Moderation by exclusion threshold</h4>
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r">models[[outcome]] %>%<span class="st"> </span>
<span class="st"> </span><span class="kw">test_moderator</span>(<span class="st">"included_levels"</span>, diary, <span class="dt">xlevels =</span> <span class="dv">4</span>)</code></pre></div>
<pre><code>## Error in eval(expr, envir, enclos): could not find function "%>%"</code></pre>
</div>
<div id="moderation-by-cycle-length" class="section level4">
<h4>Moderation by cycle length</h4>
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r">models[[outcome]] %>%<span class="st"> </span>
<span class="st"> </span><span class="kw">test_moderator</span>(<span class="st">"cycle_length_groups"</span>, diary, <span class="dt">xlevels =</span> <span class="dv">4</span>)</code></pre></div>
<pre><code>## Error in eval(expr, envir, enclos): could not find function "%>%"</code></pre>
</div>
<div id="moderation-by-certainty-about-menstruation-parameters" class="section level4">
<h4>Moderation by certainty about menstruation parameters</h4>
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r">models[[outcome]] %>%<span class="st"> </span>
<span class="st"> </span><span class="kw">test_moderator</span>(<span class="st">"certainty_menstruation"</span>, diary)</code></pre></div>
<pre><code>## Error in eval(expr, envir, enclos): could not find function "%>%"</code></pre>
</div>
<div id="moderation-by-cycle-regularity" class="section level4">
<h4>Moderation by cycle regularity</h4>
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r">models[[outcome]] %>%<span class="st"> </span>
<span class="st"> </span><span class="kw">test_moderator</span>(<span class="st">"cycle_regularity"</span>, diary)</code></pre></div>
<pre><code>## Error in eval(expr, envir, enclos): could not find function "%>%"</code></pre>
</div>
<div id="moderation-by-cohabitation-status" class="section level4">
<h4>Moderation by cohabitation status</h4>
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r">models[[outcome]] %>%<span class="st"> </span>
<span class="st"> </span><span class="kw">test_moderator</span>(<span class="st">"cohabitation"</span>, diary)</code></pre></div>
<pre><code>## Error in eval(expr, envir, enclos): could not find function "%>%"</code></pre>
</div>
<div id="moderation-by-relationship-status" class="section level4">
<h4>Moderation by relationship status</h4>
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r">models[[outcome]] %>%<span class="st"> </span>
<span class="st"> </span><span class="kw">test_moderator</span>(<span class="st">"relationship_status_clean"</span>, diary)</code></pre></div>
<pre><code>## Error in eval(expr, envir, enclos): could not find function "%>%"</code></pre>
</div>
</div>
<div id="moderators" class="section level3 tab-content">
<h3>Moderators</h3>
<div id="relative-attractiveness-to-self" class="section level4">
<h4>Relative attractiveness to self</h4>
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r">models[[outcome]] %>%<span class="st"> </span>
<span class="st"> </span><span class="kw">test_moderator</span>(<span class="st">"partner_attractiveness_rel_to_self"</span>, diary)</code></pre></div>
<pre><code>## Error in eval(expr, envir, enclos): could not find function "%>%"</code></pre>
</div>
<div id="partners-shortterm-attractiveness" class="section level4">
<h4>Partner’s shortterm attractiveness</h4>
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r">models[[outcome]] %>%<span class="st"> </span>
<span class="st"> </span><span class="kw">test_moderator</span>(<span class="st">"partner_attractiveness_shortterm"</span>, diary)</code></pre></div>
<pre><code>## Error in eval(expr, envir, enclos): could not find function "%>%"</code></pre>
</div>
<div id="partners-longterm-attractiveness" class="section level4">
<h4>Partner’s longterm attractiveness</h4>
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r">models[[outcome]] %>%<span class="st"> </span>
<span class="st"> </span><span class="kw">test_moderator</span>(<span class="st">"partner_attractiveness_longterm"</span>, diary)</code></pre></div>
<pre><code>## Error in eval(expr, envir, enclos): could not find function "%>%"</code></pre>
</div>
<div id="partners-global-attractiveness" class="section level4">
<h4>Partner’s global attractiveness</h4>
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r">models[[outcome]] %>%<span class="st"> </span>
<span class="st"> </span><span class="kw">test_moderator</span>(<span class="st">"partner_attractiveness_global"</span>, diary)</code></pre></div>
<pre><code>## Error in eval(expr, envir, enclos): could not find function "%>%"</code></pre>
</div>
<div id="relationship-satisfaction" class="section level4">
<h4>Relationship satisfaction</h4>
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r">models[[outcome]] %>%<span class="st"> </span>
<span class="st"> </span><span class="kw">test_moderator</span>(<span class="st">"ZIP"</span>, diary)</code></pre></div>
<pre><code>## Error in eval(expr, envir, enclos): could not find function "%>%"</code></pre>
</div>
<div id="partners-physical-attractiveness" class="section level4">
<h4>Partner’s physical attractiveness</h4>
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r">models[[outcome]] %>%<span class="st"> </span>
<span class="st"> </span><span class="kw">test_moderator</span>(<span class="st">"partner_attractiveness_physical"</span>, diary) </code></pre></div>
<pre><code>## Error in eval(expr, envir, enclos): could not find function "%>%"</code></pre>
</div>
<div id="partners-job-and-income" class="section level4">
<h4>Partner’s job and income</h4>
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r">models[[outcome]] %>%<span class="st"> </span>
<span class="st"> </span><span class="kw">test_moderator</span>(<span class="st">"partner_attractiveness_money"</span>, diary)</code></pre></div>
<pre><code>## Error in eval(expr, envir, enclos): could not find function "%>%"</code></pre>
</div>
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