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wellcomeor can't be rendered anymore #523

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cderv opened this issue Mar 29, 2023 · 3 comments
Open

wellcomeor can't be rendered anymore #523

cderv opened this issue Mar 29, 2023 · 3 comments
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bug an unexpected problem or unintended behavior help wanted ❤️ we'd love your help!

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@cderv
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cderv commented Mar 29, 2023

Issue with rticles::wellcomeor_article that makes our CI fail

! Undefined control sequence.
\__hook begindocument/end ...f \lastpage@putlabel 
                                                  {\relax }\__hook_toplevel ...
l.45 \begin{document}

I don't know what the issue is really - I have look around and can't find the issue. It is something with a package that use begin hooks

the specific .sty file from Overleaf hasn't been update in 6 years it seems. and the Journal website does not offer templates.

I'll be deactivating tests in the package to fix CI for now, and we'll try to fix it if we find more information.

cc @yihui if you have some idea or insights

cc @arnold-c as you submitted initially in #436 - maybe you can help us on this

@cderv cderv added bug an unexpected problem or unintended behavior help wanted ❤️ we'd love your help! labels Mar 29, 2023
@cderv cderv changed the title wellcomeor can't be render anymore wellcomeor can't be rendered anymore Mar 29, 2023
@yihui
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yihui commented Mar 29, 2023

I have no idea. I've never seen this error before.

@arnold-c
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arnold-c commented Apr 2, 2023

Happy to look into it.

I've had a quick look and couldn't find a whole lot, though I'll have a bit more time this week to explore. Trying to render the skeleton.Rmd on my laptop produced the following relevant code in the skeleton.log file. I'm not sure if this is helpful as I couldn't find anything related online, but given you both know more about LaTeX than I do it's possible it might contain something useful.

skeleton.log

This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022) (preloaded format=pdflatex 2023.3.20)  2 APR 2023 13:37
entering extended mode
 restricted \write18 enabled.
 %&-line parsing enabled.
**skeleton.tex
(./skeleton.tex
LaTeX2e <2022-11-01> patch level 1
L3 programming layer <2023-02-22> (/usr/local/texlive/2022/texmf-dist/tex/latex
/base/article.cls
Document Class: article 2022/07/02 v1.4n Standard LaTeX document class
(/usr/local/texlive/2022/texmf-dist/tex/latex/base/size10.clo
File: size10.clo 2022/07/02 v1.4n Standard LaTeX file (size option)
)
\c@part=\count185
\c@section=\count186
\c@subsection=\count187
\c@subsubsection=\count188
\c@paragraph=\count189
\c@subparagraph=\count190
\c@figure=\count191
\c@table=\count192
\abovecaptionskip=\skip48
\belowcaptionskip=\skip49
\bibindent=\dimen140
) (./WellcomeOR_styles.sty
Package: WellcomeOR_styles 
(/usr/local/texlive/2022/texmf-dist/tex/latex/preprint/authblk.sty
Package: authblk 2001/02/27 1.3 (PWD)
\affilsep=\skip50
\@affilsep=\skip51
\c@Maxaffil=\count193
\c@authors=\count194
\c@affil=\count195
) (/usr/local/texlive/2022/texmf-dist/tex/generic/babel/babel.sty
Package: babel 2023/02/13 3.86 The Babel package
\babel@savecnt=\count196
\U@D=\dimen141
\l@unhyphenated=\language87
(/usr/local/texlive/2022/texmf-dist/tex/generic/babel/txtbabel.def)
\bbl@readstream=\read2
\bbl@dirlevel=\count197
(/usr/local/texlive/2022/texmf-dist/tex/generic/babel-english/english.ldf
Language: english 2017/06/06 v3.3r English support from the babel system
Package babel Info: Hyphen rules for 'canadian' set to \l@english
(babel)             (\language0). Reported on input line 102.
Package babel Info: Hyphen rules for 'australian' set to \l@ukenglish
(babel)             (\language21). Reported on input line 105.
Package babel Info: Hyphen rules for 'newzealand' set to \l@ukenglish
(babel)             (\language21). Reported on input line 108.
))
(/usr/local/texlive/2022/texmf-dist/tex/generic/babel/locale/en/babel-english.t
ex
Package babel Info: Importing font and identification data for english
(babel)             from babel-en.ini. Reported on input line 11.
) (/usr/local/texlive/2022/texmf-dist/tex/latex/base/inputenc.sty
Package: inputenc 2021/02/14 v1.3d Input encoding file
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Package: fontenc 2021/04/29 v2.0v Standard LaTeX package
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Package: mathdesign 2013/08/29 v2.31 Math Design Project
(/usr/local/texlive/2022/texmf-dist/tex/latex/graphics/keyval.sty
Package: keyval 2022/05/29 v1.15 key=value parser (DPC)
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Package: mdbch 2013/08/29 v2.31 bitstream bitstream charter + mdbch (Math Desig
n Project)
(/usr/local/texlive/2022/texmf-dist/tex/latex/mathdesign/mdfont.def
File: mdfont.def 2013/08/29 v2.31 (Math Design Project)
) (/usr/local/texlive/2022/texmf-dist/tex/latex/mathdesign/mdsffont.def
File: mdsffont.def 2013/08/29 v2.31 (Math Design Project)

LaTeX Info: Font shape OT1/phv/mc/n has incorrect series value `mc'.
            It should not contain an `m'! Please correct it.
            Found on input line 53.


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            It should not contain an `m'! Please correct it.
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            It should not contain an `m'! Please correct it.
            Found on input line 59.


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            It should not contain an `m'! Please correct it.
            Found on input line 79.


LaTeX Info: Font shape T1/phv/mc/n has incorrect series value `mc'.
            It should not contain an `m'! Please correct it.
            Found on input line 102.


LaTeX Info: Font shape T1/phv/mc/sc has incorrect series value `mc'.
            It should not contain an `m'! Please correct it.
            Found on input line 105.


LaTeX Info: Font shape T1/phv/mc/sl has incorrect series value `mc'.
            It should not contain an `m'! Please correct it.
            Found on input line 108.


LaTeX Info: Font shape T1/phv/mc/it has incorrect series value `mc'.
            It should not contain an `m'! Please correct it.
            Found on input line 128.


LaTeX Info: Font shape OT1/uhv/mc/n has incorrect series value `mc'.
            It should not contain an `m'! Please correct it.
            Found on input line 259.


LaTeX Info: Font shape OT1/uhv/mc/sc has incorrect series value `mc'.
            It should not contain an `m'! Please correct it.
            Found on input line 262.


LaTeX Info: Font shape OT1/uhv/mc/sl has incorrect series value `mc'.
            It should not contain an `m'! Please correct it.
            Found on input line 265.


LaTeX Info: Font shape OT1/uhv/mc/it has incorrect series value `mc'.
            It should not contain an `m'! Please correct it.
            Found on input line 268.


LaTeX Info: Font shape T1/uhv/mc/n has incorrect series value `mc'.
            It should not contain an `m'! Please correct it.
            Found on input line 313.


LaTeX Info: Font shape T1/uhv/mc/sc has incorrect series value `mc'.
            It should not contain an `m'! Please correct it.
            Found on input line 316.


LaTeX Info: Font shape T1/uhv/mc/sl has incorrect series value `mc'.
            It should not contain an `m'! Please correct it.
            Found on input line 319.


LaTeX Info: Font shape T1/uhv/mc/it has incorrect series value `mc'.
            It should not contain an `m'! Please correct it.
            Found on input line 322.

) (/usr/local/texlive/2022/texmf-dist/tex/latex/mathdesign/mdttfont.def
File: mdttfont.def 2013/08/29 v2.31 (Math Design Project)
)
\symmdcal=\mathgroup4
LaTeX Font Info:    Overwriting symbol font `mdcal' in version `bold'
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\symmdscr=\mathgroup5
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LaTeX Font Info:    Overwriting symbol font `largesymbols' in version `normal'
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LaTeX Font Info:    Overwriting symbol font `operators' in version `bold'
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LaTeX Font Info:    Overwriting symbol font `letters' in version `bold'
(Font)                  OML/cmm/b/it --> OML/mdbch/b/it on input line 127.
LaTeX Font Info:    Overwriting symbol font `symbols' in version `bold'
(Font)                  OMS/cmsy/b/n --> OMS/mdbch/b/n on input line 128.
LaTeX Font Info:    Overwriting symbol font `largesymbols' in version `bold'
(Font)                  OMX/cmex/m/n --> OMX/mdbch/b/n on input line 129.
LaTeX Font Info:    Overwriting math alphabet `\mathrm' in version `normal'
(Font)                  OT1/mdbch/m/n --> T1/mdbch/m/n on input line 131.
LaTeX Font Info:    Overwriting math alphabet `\mathbf' in version `normal'
(Font)                  OT1/cmr/bx/n --> T1/mdbch/b/n on input line 132.
LaTeX Font Info:    Overwriting math alphabet `\mathit' in version `normal'
(Font)                  OT1/cmr/m/it --> T1/mdbch/m/it on input line 133.
LaTeX Font Info:    Overwriting math alphabet `\mathsf' in version `normal'
(Font)                  OT1/cmss/m/n --> T1/cmss/m/n on input line 134.
LaTeX Font Info:    Overwriting math alphabet `\mathtt' in version `normal'
(Font)                  OT1/cmtt/m/n --> T1/cmtt/m/n on input line 135.
LaTeX Font Info:    Overwriting math alphabet `\mathrm' in version `bold'
(Font)                  OT1/mdbch/b/n --> T1/mdbch/b/n on input line 137.
LaTeX Font Info:    Overwriting math alphabet `\mathbf' in version `bold'
(Font)                  OT1/cmr/bx/n --> T1/mdbch/b/n on input line 138.
LaTeX Font Info:    Overwriting math alphabet `\mathit' in version `bold'
(Font)                  OT1/cmr/bx/it --> T1/mdbch/b/it on input line 139.
LaTeX Font Info:    Overwriting math alphabet `\mathsf' in version `bold'
(Font)                  OT1/cmss/bx/n --> T1/cmss/b/n on input line 140.
LaTeX Font Info:    Overwriting math alphabet `\mathtt' in version `bold'
(Font)                  OT1/cmtt/m/n --> T1/cmtt/b/n on input line 141.
\symlettersupright=\mathgroup6
LaTeX Font Info:    Overwriting symbol font `lettersupright' in version `bold'
(Font)                  OML/mdbch/m/n --> OML/mdbch/b/n on input line 144.
LaTeX Font Info:    Redeclaring math alphabet \mathrm on input line 145.
LaTeX Font Info:    Overwriting math alphabet `\mathcal' in version `normal'
(Font)                  OMS/mdbch/m/n --> OMS/mdbch/m/n on input line 167.
(/usr/local/texlive/2022/texmf-dist/tex/latex/xkeyval/xkeyval.sty
Package: xkeyval 2022/06/16 v2.9 package option processing (HA)
(/usr/local/texlive/2022/texmf-dist/tex/generic/xkeyval/xkeyval.tex (/usr/local
/texlive/2022/texmf-dist/tex/generic/xkeyval/xkvutils.tex
\XKV@toks=\toks19
\XKV@tempa@toks=\toks20
)
\XKV@depth=\count198
File: xkeyval.tex 2014/12/03 v2.7a key=value parser (HA)
))
LaTeX Font Info:    Trying to load font information for T1+mdbch on input line 
186.
(/usr/local/texlive/2022/texmf-dist/tex/latex/mathdesign/mdbch/t1mdbch.fd
File: t1mdbch.fd 2013/08/29 Fontinst v1.933 font definitions for T1/mdbch.
)
LaTeX Font Info:    Font shape `T1/mdbch/m/n' will be
(Font)              scaled to size 9.60007pt on input line 186.
LaTeX Font Info:    Redeclaring math accent \widetilde on input line 449.
LaTeX Font Info:    Redeclaring math accent \widehat on input line 450.
Now handling font encoding MDA ...
... no UTF-8 mapping file for font encoding MDA
\symmathdesignA=\mathgroup7
LaTeX Font Info:    Overwriting symbol font `mathdesignA' in version `bold'
(Font)                  MDA/mdbch/m/n --> MDA/mdbch/b/n on input line 491.
Now handling font encoding MDB ...
... no UTF-8 mapping file for font encoding MDB
\symmathdesignB=\mathgroup8
LaTeX Font Info:    Overwriting symbol font `mathdesignB' in version `bold'
(Font)                  MDB/mdbch/m/n --> MDB/mdbch/b/n on input line 498.
\@emptytoks=\toks21
LaTeX Font Info:    Redeclaring math accent \widetilde on input line 532.
LaTeX Font Info:    Redeclaring math accent \widehat on input line 533.
\rulethickness=\skip52
) (/usr/local/texlive/2022/texmf-dist/tex/latex/base/fontenc.sty
Package: fontenc 2021/04/29 v2.0v Standard LaTeX package
)) (/usr/local/texlive/2022/texmf-dist/tex/latex/colortbl/colortbl.sty
Package: colortbl 2022/06/20 v1.0f Color table columns (DPC)
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Package: array 2022/09/04 v2.5g Tabular extension package (FMi)
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\extrarowheight=\dimen143
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) (/usr/local/texlive/2022/texmf-dist/tex/latex/graphics/color.sty
Package: color 2022/01/06 v1.3d Standard LaTeX Color (DPC)
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)
Package color Info: Driver file: pdftex.def on input line 149.
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Package xcolor Info: Package option `usenames' ignored on input line 218.
Package xcolor Info: Driver file: pdftex.def on input line 227.
LaTeX Info: Redefining \color on input line 711.
(/usr/local/texlive/2022/texmf-dist/tex/latex/graphics/mathcolor.ltx)
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\inf@bad=\count266
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(/usr/local/texlive/2022/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
\scratchcounter=\count326
\scratchdimen=\dimen288
\scratchbox=\box68
\nofMPsegments=\count327
\nofMParguments=\count328
\everyMPshowfont=\toks43
\MPscratchCnt=\count329
\MPscratchDim=\dimen289
\MPnumerator=\count330
\makeMPintoPDFobject=\count331
\everyMPtoPDFconversion=\toks44
) (/usr/local/texlive/2022/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty
Package: epstopdf-base 2020-01-24 v2.11 Base part for package epstopdf
(/usr/local/texlive/2022/texmf-dist/tex/latex/grfext/grfext.sty
Package: grfext 2019/12/03 v1.3 Manage graphics extensions (HO)
)
Package epstopdf-base Info: Redefining graphics rule for `.eps' on input line 4
85.
Package grfext Info: Graphics extension search list:
(grfext)             [.pdf,.png,.jpg,.mps,.jpeg,.jbig2,.jb2,.PDF,.PNG,.JPG,.JPE
G,.JBIG2,.JB2,.eps]
(grfext)             \AppendGraphicsExtensions on input line 504.
(/usr/local/texlive/2022/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg
File: epstopdf-sys.cfg 2010/07/13 v1.3 Configuration of (r)epstopdf for TeX Liv
e
))
Package caption Info: Begin \AtBeginDocument code.
Package caption Info: hyperref package is loaded.
Package caption Info: End \AtBeginDocument code.

Package todonotes Warning: The length marginparwidth is less than 2cm and will 
most likely cause issues with the appearance of inserted todonotes. The issue c
an be solved by adding a line like \setlength {\marginparwidth }{2cm} prior to 
loading the todonotes package. on input line 45.

*geometry* driver: auto-detecting
*geometry* detected driver: pdftex
*geometry* verbose mode - [ preamble ] result:
* driver: pdftex
* paper: a4paper
* layout: <same size as paper>
* layoutoffset:(h,v)=(0.0pt,0.0pt)
* modes: 
* h-part:(L,W,R)=(51.21504pt, 495.07779pt, 51.21504pt)
* v-part:(T,H,B)=(62.59596pt, 719.85492pt, 62.59596pt)
* \paperwidth=597.50787pt
* \paperheight=845.04684pt
* \textwidth=495.07779pt
* \textheight=719.85492pt
* \oddsidemargin=-21.05495pt
* \evensidemargin=-21.05495pt
* \topmargin=-46.67403pt
* \headheight=16.5pt
* \headsep=25.0pt
* \topskip=10.0pt
* \footskip=30.0pt
* \marginparwidth=4.0pt
* \marginparsep=10.0pt
* \columnsep=18.06749pt
* \skip\footins=9.0pt plus 4.0pt minus 2.0pt
* \hoffset=0.0pt
* \voffset=0.0pt
* \mag=1000
* \@twocolumntrue
* \@twosidefalse
* \@mparswitchfalse
* \@reversemarginfalse
* (1in=72.27pt=25.4mm, 1cm=28.453pt)

Package hyperref Info: Link coloring OFF on input line 45.
! Undefined control sequence.
\__hook begindocument/end ...f \lastpage@putlabel 
                                                  {\relax }\__hook_toplevel ...
l.45 \begin{document}
                      
Here is how much of TeX's memory you used:
 26173 strings out of 476024
 482352 string characters out of 5790018
 1849388 words of memory out of 5000000
 46179 multiletter control sequences out of 15000+600000
 515116 words of font info for 34 fonts, out of 8000000 for 9000
 1141 hyphenation exceptions out of 8191
 114i,1n,131p,469b,396s stack positions out of 10000i,1000n,20000p,200000b,200000s

!  ==> Fatal error occurred, no output PDF file produced!

@cderv
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cderv commented Apr 3, 2023

Thanks @arnold-c !

The error I shared in first post comes from the log file. By experience, this is some error happening in the hooks provided by \begin{document}. (about hooks: https://ctan.math.illinois.edu/macros/latex/base/lthooks-doc.pdf - Chapter : 3.2 Hooks provided by \begin{document})

Possibly the class file, or one of the dependency loaded as an issue with latest LaTeX. We add some issues in the past that looks similar: #329 (comment) but not a fix as straightforward to apply and different timing too.

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