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Fails to build with GCC 7 #76

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sjackman opened this issue Oct 19, 2018 · 2 comments
Open

Fails to build with GCC 7 #76

sjackman opened this issue Oct 19, 2018 · 2 comments

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@sjackman
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    porechop/include/seqan/system/file_sync.h: In member function 'bool seqan::File<seqan::Sync<TSpec> >::openTemp(int)':
    porechop/include/seqan/system/file_sync.h:337:25: error: call of overloaded 'empty(std::__cxx11::string&)' is ambiguous
             if (empty(tmpDir))
                             ^

See bioconda/bioconda-recipes#11399
and https://circleci.com/gh/bioconda/bioconda-recipes/30016

@e73kiel
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e73kiel commented Jan 8, 2019

OS=Centos 7.6
Python version=Python 3.6.3
gcc version=gcc 7.3.0

I updated

Porechop/porechop/include/seqan
with
seqan/include/seqan/

and installation finished without error.

@dpryan79
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This can partially be solved by using a more recent seqan, but that results in a couple failed unit tests:

https://circleci.com/gh/bioconda/bioconda-recipes/69713

See bioconda/bioconda-recipes#16212 for an example. I'm not sure about the changes in the seqan versions and how those relate to this.

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3 participants