diff --git a/.github/.gitignore b/.github/.gitignore new file mode 100644 index 0000000..2d19fc7 --- /dev/null +++ b/.github/.gitignore @@ -0,0 +1 @@ +*.html diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml new file mode 100644 index 0000000..7c81f7d --- /dev/null +++ b/.github/workflows/R-CMD-check.yaml @@ -0,0 +1,50 @@ +# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples +# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help +on: + push: + branches: [main, master] + pull_request: + branches: [main, master] + +name: R-CMD-check + +jobs: + R-CMD-check: + runs-on: ${{ matrix.config.os }} + + name: ${{ matrix.config.os }} (${{ matrix.config.r }}) + + strategy: + fail-fast: false + matrix: + config: + - {os: macos-latest, r: 'release'} + - {os: windows-latest, r: 'release'} + - {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'} + - {os: ubuntu-latest, r: 'release'} + - {os: ubuntu-latest, r: 'oldrel-1'} + + env: + GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} + R_KEEP_PKG_SOURCE: yes + VCR_VERBOSE_ERRORS: true + + steps: + - uses: actions/checkout@v3 + + - uses: r-lib/actions/setup-pandoc@v2 + + - uses: r-lib/actions/setup-r@v2 + with: + r-version: ${{ matrix.config.r }} + http-user-agent: ${{ matrix.config.http-user-agent }} + use-public-rspm: true + + - uses: r-lib/actions/setup-r-dependencies@v2 + with: + extra-packages: any::rcmdcheck + needs: check + + - uses: r-lib/actions/check-r-package@v2 + with: + upload-snapshots: true diff --git a/.github/workflows/R-check.yml b/.github/workflows/R-check.yml deleted file mode 100644 index 339554c..0000000 --- a/.github/workflows/R-check.yml +++ /dev/null @@ -1,101 +0,0 @@ -on: [push, pull_request] - -name: R-check - -jobs: - R-check: - runs-on: ${{ matrix.config.os }} - - name: ${{ matrix.config.os }} (${{ matrix.config.r }}) - - strategy: - fail-fast: false - matrix: - config: - - { os: windows-latest, r: 'release'} - - { os: macOS-latest, r: 'release'} - # - { os: macOS-latest, r: 'devel'} - - { os: ubuntu-18.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"} - - env: - R_REMOTES_NO_ERRORS_FROM_WARNINGS: true - RSPM: ${{ matrix.config.rspm }} - VCR_VERBOSE_ERRORS: true - - steps: - - uses: actions/checkout@v2 - - - uses: r-lib/actions/setup-r@v1 - with: - r-version: ${{ matrix.config.r }} - - - uses: r-lib/actions/setup-pandoc@v1 - - - name: Query dependencies - run: | - install.packages('remotes') - saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) - writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") - shell: Rscript {0} - - - name: Cache R packages - if: runner.os != 'Windows' - uses: actions/cache@v2 - with: - path: ${{ env.R_LIBS_USER }} - key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} - restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- - - - name: install macOS system dependencies - if: runner.os == 'macOS' - continue-on-error: true - run: | - brew install pkg-config gdal udunits proj netcdf - - - name: Install system dependencies - if: runner.os == 'Linux' - env: - RHUB_PLATFORM: linux-x86_64-ubuntu-gcc - run: | - sudo apt update - sudo apt install -y --no-install-recommends \ - gdal-bin \ - libgdal-dev \ - libproj-dev \ - netcdf-bin - - - name: Install dependencies - run: | - remotes::install_deps(dependencies = TRUE) - remotes::install_cran(c("rcmdcheck", "taxize")) - shell: Rscript {0} - - - name: Session info - run: | - options(width = 100) - pkgs <- installed.packages()[, "Package"] - sessioninfo::session_info(pkgs, include_base = TRUE) - shell: Rscript {0} - - - name: Check - env: - _R_CHECK_CRAN_INCOMING_: false - run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check") - shell: Rscript {0} - - - name: Show testthat output - if: always() - run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true - shell: bash - - - name: Upload check results - if: failure() - uses: actions/upload-artifact@v2 - with: - name: ${{ runner.os }}-r${{ matrix.config.r }}-results - path: check - - - name: Test coverage - if: matrix.config.os == 'ubuntu-18.04' && matrix.config.r == 'release' - run: | - Rscript -e 'remotes::install_cran("covr")' -e 'covr::codecov(token = "${{secrets.CODECOV_TOKEN}}")' diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml new file mode 100644 index 0000000..2c5bb50 --- /dev/null +++ b/.github/workflows/test-coverage.yaml @@ -0,0 +1,50 @@ +# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples +# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help +on: + push: + branches: [main, master] + pull_request: + branches: [main, master] + +name: test-coverage + +jobs: + test-coverage: + runs-on: ubuntu-latest + env: + GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} + + steps: + - uses: actions/checkout@v3 + + - uses: r-lib/actions/setup-r@v2 + with: + use-public-rspm: true + + - uses: r-lib/actions/setup-r-dependencies@v2 + with: + extra-packages: any::covr + needs: coverage + + - name: Test coverage + run: | + covr::codecov( + quiet = FALSE, + clean = FALSE, + install_path = file.path(Sys.getenv("RUNNER_TEMP"), "package") + ) + shell: Rscript {0} + + - name: Show testthat output + if: always() + run: | + ## -------------------------------------------------------------------- + find ${{ runner.temp }}/package -name 'testthat.Rout*' -exec cat '{}' \; || true + shell: bash + + - name: Upload test results + if: failure() + uses: actions/upload-artifact@v3 + with: + name: coverage-test-failures + path: ${{ runner.temp }}/package diff --git a/README.Rmd b/README.Rmd index 2a337ba..4e24753 100644 --- a/README.Rmd +++ b/README.Rmd @@ -9,12 +9,13 @@ knitr::opts_chunk$set( message = FALSE ) ``` - + [![cran checks](https://cranchecks.info/badges/worst/rerddap)](https://cranchecks.info/pkgs/rerddap) -[![R-check](https://github.com/ropensci/rerddap/workflows/R-check/badge.svg)](https://github.com/ropensci/rerddap/actions) + [![R-CMD-check](https://github.com/ropensci/rerddap/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/ropensci/rerddap/actions/workflows/R-CMD-check.yaml) [![codecov.io](https://codecov.io/github/ropensci/rerddap/coverage.svg?branch=master)](https://codecov.io/github/ropensci/rerddap?branch=master) [![rstudio mirror downloads](https://cranlogs.r-pkg.org/badges/rerddap)](https://github.com/r-hub/cranlogs.app) [![cran version](https://www.r-pkg.org/badges/version/rerddap)](https://cran.r-project.org/package=rerddap) + `rerddap` is a general purpose R client for working with ERDDAP servers. diff --git a/README.md b/README.md index f64cd46..f179547 100644 --- a/README.md +++ b/README.md @@ -1,13 +1,13 @@ rerddap ===== - - + [![cran checks](https://cranchecks.info/badges/worst/rerddap)](https://cranchecks.info/pkgs/rerddap) -[![R-check](https://github.com/ropensci/rerddap/workflows/R-check/badge.svg)](https://github.com/ropensci/rerddap/actions) + [![R-CMD-check](https://github.com/ropensci/rerddap/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/ropensci/rerddap/actions/workflows/R-CMD-check.yaml) [![codecov.io](https://codecov.io/github/ropensci/rerddap/coverage.svg?branch=master)](https://codecov.io/github/ropensci/rerddap?branch=master) [![rstudio mirror downloads](https://cranlogs.r-pkg.org/badges/rerddap)](https://github.com/r-hub/cranlogs.app) [![cran version](https://www.r-pkg.org/badges/version/rerddap)](https://cran.r-project.org/package=rerddap) + `rerddap` is a general purpose R client for working with ERDDAP servers.