_pkgdown.yml

url: https://docs.ropensci.org/BaseSet

template:
  package: rotemplate

development:
  mode: auto

toc:
  depth: 3

# News with links to blogposts
news:
 releases:
 - text: "BaseSet 0.9.0"
   href: https://llrs.dev/post/2023/08/23/baseset-0-9-0/

authors:
  Lluís Revilla Sancho:
    href: https://llrs.dev

reference:
  - title: "General"
    desc: >
      Functions to create a TidySet from other formats
    contents:
      - '`BaseSet-package`'
      - '`tidySet`'
      - '`tidy`'
      - '`as.data.frame.TidySet`'
      - '`as.list.TidySet`'
      - '`incidence`'
  - title: "R operations"
    desc: Functions to use TidySets
    contents:
      - '`c,TidySet-method`'
      - '`extract-TidySet`'
      - '`length.TidySet`'
      - '`lengths,TidySet-method`'
      - '`dimnames.TidySet`'
      - '`names.TidySet`'
      - '`show,TidySet-method`'
  - title: "Set operations"
    desc: Functions to perform set operations
    contents:
      - '`adjacency`'
      - '`cartesian`'
      - '`cardinality`'
      - '`complement`'
      - '`complement_element`'
      - '`complement_set`'
      - '`incidence`'
      - '`independent`'
      - '`intersection`'
      - '`is.fuzzy`'
      - '`power_set`'
      - '`size`'
      - '`subtract`'
      - '`union`'
  - title: Working with TidySet
    desc: ~
    contents:
      - '`TidySet-class`'
      - '`activate`'
      - '`add_column`'
      - '`add_elements`'
      - '`add_relation`'
      - '`add_relations`'
      - '`add_sets`'
      - '`adjacency`'
      - '`droplevels.TidySet`'
      - '`element_size`'
      - '`elements`'
      - '`group`'
      - '`is_nested`'
      - '`nElements`'
      - '`nRelations`'
      - '`nSets`'
      - '`move_to`'
      - '`name_elements<-`'
      - '`name_elements`'
      - '`name_sets<-`'
      - '`name_sets`'
      - '`remove_column`'
      - '`remove_element`'
      - '`remove_relation`'
      - '`remove_set`'
      - '`rename_elements`'
      - '`rename_set`'
      - '`relations`'
      - '`set_size`'
      - '`sets`'
  - title: "Reading files"
    desc: >
      Functions to read files in several formats
    contents:
      - '`getGAF`'
      - '`getGMT`'
      - '`getOBO`'
  - title: "dplyr functions"
    desc: ~
    contents:
      - '`arrange.TidySet`'
      - '`filter.TidySet`'
      - '`group_by.TidySet`'
      - '`mutate.TidySet`'
      - '`pull.TidySet`'
      - '`select.TidySet`'

  - title: "Utiles"
    desc: Functions or data to help or show how to work with sets
    contents:
      - '`naming`'
      - '`set_symbols`'
      - '`length_set`'
      - '`union_probability`'
      - '`union_closed`'
      - '`multiply_probabilities`'