I can't install diversitree in linux (R version 4.1.0 (2021-05-18) -- "Camp Pontanezen")

[rgarciasandoval]

Hi

I can Install diversitree, I am always having the error

/usr/bin/ld: /usr/local/lib/libfftw3.a(assert.o): relocation R_X86_64_PC32 against symbol `stdout@@GLIBC_2.2.5' can not be used when making a shared object; recompile with -fPIC
/usr/bin/ld: final link failed: bad value
collect2: error: ld returned 1 exit status
make: *** [/usr/share/R/share/make/shlib.mk:10: diversitree.so] Error 1
ERROR: compilation failed for package ‘diversitree’

Even if I clone the github repository and install from the console, I am always getting the same error....

I am on linux mint 20.1, and yes I am sure I have the libfftw3 installed

libfftw3-dev is already the newest version (3.3.8-2ubuntu1).

Any help may be welcome

cheers

[richfitz]

I can install this on ubuntu 20.04/R 4.1.0:

Details

R version 4.1.0 (2021-05-18) -- "Camp Pontanezen"
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> install.packages("diversitree")
Installing package into ‘/home/rfitzjoh/lib/R/library’
(as ‘lib’ is unspecified)
trying URL 'https://cloud.r-project.org/src/contrib/diversitree_0.9-15.tar.gz'
Content type 'application/x-gzip' length 363036 bytes (354 KB)
==================================================
downloaded 354 KB

* installing *source* package ‘diversitree’ ...
** package ‘diversitree’ successfully unpacked and MD5 sums checked
** using staged installation
checking for gcc... gcc -std=gnu99
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -std=gnu99 -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking fftw3.h usability... yes
checking fftw3.h presence... yes
checking for fftw3.h... yes
Using fftw for QuaSSE FFT calculations
checking for gsl-config... /usr/bin/gsl-config
checking if GSL version >= 1.15... yes
configure: creating ./config.status
config.status: creating src/Makevars
config.status: creating src/config.h
** libs
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2   -fpic  -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -c GslOdeBase.cpp -o GslOdeBase.o
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2   -fpic  -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -c GslOdeCompiled.cpp -o GslOdeCompiled.o
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2   -fpic  -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -c GslOdeR.cpp -o GslOdeR.o
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2   -fpic  -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -c GslOdeTime.cpp -o GslOdeTime.o
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2   -fpic  -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -c Spline.cpp -o Spline.o
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2   -fpic  -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -c TimeMachine.cpp -o TimeMachine.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2   -fpic  -std=gnu17 -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -Werror=implicit-function-declaration -c asr-joint.c -o asr-joint.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2   -fpic  -std=gnu17 -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -Werror=implicit-function-declaration -c bd-eqs.c -o bd-eqs.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2   -fpic  -std=gnu17 -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -Werror=implicit-function-declaration -c bisse-eqs.c -o bisse-eqs.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2   -fpic  -std=gnu17 -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -Werror=implicit-function-declaration -c bisseness-eqs.c -o bisseness-eqs.o
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic -c bucexp.f -o bucexp.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2   -fpic  -std=gnu17 -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -Werror=implicit-function-declaration -c classe-eqs.c -o classe-eqs.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2   -fpic  -std=gnu17 -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -Werror=implicit-function-declaration -c continuous.c -o continuous.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2   -fpic  -std=gnu17 -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -Werror=implicit-function-declaration -c derivs.c -o derivs.o
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic -c dgcoov.f -o dgcoov.o
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic -c dgexpvi.f -o dgexpvi.o
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic -c dgpadm.f -o dgpadm.o
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic -c dmexpv.f -o dmexpv.o
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic -c dnchbv.f -o dnchbv.o
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic -c dsexpv.f -o dsexpv.o
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic -c dsexpvi.f -o dsexpvi.o
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic -c expm.f -o expm.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2   -fpic  -std=gnu17 -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -Werror=implicit-function-declaration -c geosse-eqs.c -o geosse-eqs.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2   -fpic  -std=gnu17 -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -Werror=implicit-function-declaration -c hdr.c -o hdr.o
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic -c hyperg.f -o hyperg.o
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2   -fpic  -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -c interface.cpp -o interface.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2   -fpic  -std=gnu17 -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -Werror=implicit-function-declaration -c mkn-eqs.c -o mkn-eqs.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2   -fpic  -std=gnu17 -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -Werror=implicit-function-declaration -c mkn-expokit.c -o mkn-expokit.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2   -fpic  -std=gnu17 -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -Werror=implicit-function-declaration -c mkn-meristic-eqs.c -o mkn-meristic-eqs.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2   -fpic  -std=gnu17 -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -Werror=implicit-function-declaration -c mkn-pij.c -o mkn-pij.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2   -fpic  -std=gnu17 -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -Werror=implicit-function-declaration -c musse-eqs.c -o musse-eqs.o
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic -c nucexp.f -o nucexp.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2   -fpic  -std=gnu17 -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -Werror=implicit-function-declaration -c quasse-eqs-fftC.c -o quasse-eqs-fftC.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2   -fpic  -std=gnu17 -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -Werror=implicit-function-declaration -c quasse-eqs-mol.c -o quasse-eqs-mol.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2   -fpic  -std=gnu17 -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -Werror=implicit-function-declaration -c rfftw.c -o rfftw.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2   -fpic  -std=gnu17 -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -Werror=implicit-function-declaration -c scm-mkn.c -o scm-mkn.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2   -fpic  -std=gnu17 -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -Werror=implicit-function-declaration -c simulate-bisse.c -o simulate-bisse.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2   -fpic  -std=gnu17 -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -Werror=implicit-function-declaration -c util-matrix.c -o util-matrix.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2   -fpic  -std=gnu17 -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -Werror=implicit-function-declaration -c util-splines.c -o util-splines.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2   -fpic  -std=gnu17 -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -Werror=implicit-function-declaration -c util.c -o util.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2   -fpic  -std=gnu17 -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -Werror=implicit-function-declaration -c zzz.c -o zzz.o
g++ -std=gnu++14 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o diversitree.so GslOdeBase.o GslOdeCompiled.o GslOdeR.o GslOdeTime.o Spline.o TimeMachine.o asr-joint.o bd-eqs.o bisse-eqs.o bisseness-eqs.o bucexp.o classe-eqs.o continuous.o derivs.o dgcoov.o dgexpvi.o dgpadm.o dmexpv.o dnchbv.o dsexpv.o dsexpvi.o expm.o geosse-eqs.o hdr.o hyperg.o interface.o mkn-eqs.o mkn-expokit.o mkn-meristic-eqs.o mkn-pij.o musse-eqs.o nucexp.o quasse-eqs-fftC.o quasse-eqs-mol.o rfftw.o scm-mkn.o simulate-bisse.o util-matrix.o util-splines.o util.o zzz.o -lfftw3 -llapack -lblas -lgfortran -lm -lquadmath -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR
installing to /home/rfitzjoh/lib/R/library/00LOCK-diversitree/00new/diversitree/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (diversitree)

The downloaded source packages are in
	‘/tmp/RtmpRhIFgG/downloaded_packages’

The package is also compiling on R 4.1 on the CRAN check platforms: https://cran.r-project.org/web/checks/check_results_diversitree.html

This is probably something broken in your local package installations - google suggests glibc?

I can't provide general diversitree help I am sorry, and am no longer working in this field.

[rgarciasandoval]

Hi there

Thanks a lot for your post, well not sure if is my linux version, or what, I had no problems with R4.0, but after self update I had to re-install all my packages, and just had troubles with diversitree.
Ok I will keep looking, thanks a lot for your time

Best!

Ricardo

[rgarciasandoval]

Hi there, just as a follow up

The problem was the fftw3 compiler, I made an incorrect install, because sheared libraries was disabled so I had to remove the compiler directly from the console with sudo apt remove fftw3, and then re-install with the shared libraries option active ...ah...silly me :)