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Surprised that this is not tested, but it's a bug.
library(diversitree) pars <- c(.1, .1, .03, .03, .1, .2) set.seed(3) phy <- trees(pars, "bisse", max.taxa=25, max.t=Inf, x0=0)[[1]] #fitting a Mk2 model without and with root constraint lik <- make.mk2(phy, phy$tip.state) fit.mk2 <- find.mle(lik, c(.1, .1)) fit.mk2.root <- find.mle(lik,c(.1,.1), root=ROOT.GIVEN, root.p=c(0,1)) #fitting an ER model without and with root constraint lik2=constrain(lik,q01~q10) fit.er <- find.mle(lik2, 0.1) fit.er.root <- find.mle(lik2, 0.1, root=ROOT.GIVEN, root.p=c(0,1), keep.func=TRUE) # error fit.er.root <- find.mle(lik2, 0.1, root=ROOT.GIVEN, root.p=c(0,1), keep.func=FALSE)
Fix is just a bit off faffing in do.mle.search
Reported by Sébastien Lavergne
The text was updated successfully, but these errors were encountered:
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Surprised that this is not tested, but it's a bug.
Fix is just a bit off faffing in do.mle.search
Reported by Sébastien Lavergne
The text was updated successfully, but these errors were encountered: