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How to fix overlapping bonds in rendered image? #169

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mgreiner79 opened this issue Apr 13, 2023 · 0 comments
Open

How to fix overlapping bonds in rendered image? #169

mgreiner79 opened this issue Apr 13, 2023 · 0 comments

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@mgreiner79
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mgreiner79 commented Apr 13, 2023

Any idea what options I can change to get this to render properly?
Here is the Smiles code
C(=O)(C(=O)[O-])[O-].C(=O)(C(=O)[O-])[O-].C(=O)(C(=O)[O-])[O-].C(=O)(C(=O)[O-])[O-].O.O.[K+].[K+].[K+].[K+].[K+].[K+].[K+].[K+]

And here is the resulting render:
image

I have tried playing around with options 'overlapSensitivity' and 'overlapResolutionIterations' to fix it, but to no avail.
Any ideas?

Here is where the smiles code is from https://pubchem.ncbi.nlm.nih.gov/compound/53249650
And here is the rendering that is shown on that page.
image

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