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content.pathways_low_diagram - "Status code returned a value of 404" #36

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OmarLaham opened this issue Feb 20, 2024 · 0 comments
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@OmarLaham
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Hi,

I'm using the microbiologist-clinician.ipynb tutorial.

The tool is very useful.
I have a problem while executing the last cell in the notebook when calling: content.pathways_low_diagram(...).
Invoking the cell => No diagram is generated even that I have ~ 10 pathways_stId(s).
When I remove the %%capture to get the stdout, I get this message: "Status code returned a value of 404".

I tried to execute all the cells from the beginning (in case the token has an expiration time), but still have the same problem.

  • Previous calls in the tutorial worked very well and I'm not working over a proxy.
    ** The gene list I'm using is:
    [ANKRD45, C12orf65, GLT8D1, HSPE1-MOB4, IRF3, KMT5A, LINC01068, NAGA, PGBD1, SLC9C2, WBP2NL, ZKSCAN3, ZSCAN31]

Thanks for help.
Bests,

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