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qiime2-amplicon-2024.2 install issue #764

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splaisan opened this issue Apr 23, 2024 · 1 comment
Closed

qiime2-amplicon-2024.2 install issue #764

splaisan opened this issue Apr 23, 2024 · 1 comment

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@splaisan
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working on a server with Ubuntu 22.04.4 LTS
conda 24.1.2 installed

I followed the instructions on https://docs.qiime2.org/2024.2/install/native/ and chose linux amplicon

I get a lot of package refused during the install process
Any suggestion to improve this are welcome

$ conda env create -n qiime2-amplicon-2024.2 --file qiime2-amplicon-2024.2-py38-linux-conda.yml
Channels:
 - https://packages.qiime2.org/qiime2/2024.2/amplicon/released
 - bioconda
 - conda-forge
 - defaults
 - r
 - anaconda
Platform: linux-64
Collecting package metadata (repodata.json): done
Solving environment: failed
Channels:
 - https://packages.qiime2.org/qiime2/2024.2/amplicon/released
 - bioconda
 - conda-forge
 - defaults
 - r
 - anaconda
Platform: linux-64
Collecting package metadata (repodata.json): done
Solving environment: failed

LibMambaUnsatisfiableError: Encountered problems while solving:
  - package bleach-6.1.0-pyhd8ed1ab_0 is excluded by strict repo priority
  - package c-ares-1.27.0-hd590300_0 is excluded by strict repo priority
  - package glpk-5.0-h445213a_0 is excluded by strict repo priority
  - package jq-1.7.1-hd590300_0 is excluded by strict repo priority
  - package tqdm-4.66.2-pyhd8ed1ab_0 is excluded by strict repo priority
  - package argh-0.31.2-pyhd8ed1ab_0 is excluded by strict repo priority
  - package bioconductor-delayedmatrixstats-1.20.0-r42hdfd78af_0 requires r-matrixstats >=0.60.0, but none of the providers can be installed
  - package bioconductor-phyloseq-1.42.0-r42hdfd78af_0 requires r-ade4 >=1.7-4, but none of the providers can be installed
  - package deblur-1.1.1-pyhdfd78af_0 requires scikit-bio >=0.5.0, but none of the providers can be installed
  - package ncbi-datasets-pylib-16.6.0-pyhdfd78af_0 requires urllib3 1.26.*, but none of the providers can be installed
  - package paramiko-3.4.0-pyhd8ed1ab_0 requires pynacl >=1.5, but none of the providers can be installed
  - package q2-composition-2024.2.0-py38h898cb5b_0 requires biom-format 2.1.14.*, but none of the providers can be installed
  - package q2-dada2-2024.2.0-py38h45c52d9_0 requires r-optparse >=1.7.1, but none of the providers can be installed
  - package q2-emperor-2024.2.0-py38h2998407_0 requires emperor 1.0.4, but none of the providers can be installed
  - package yq-3.2.3-pyhd8ed1ab_0 requires xmltodict >=0.11.0, but none of the providers can be installed
  - package biopython-1.83-py39hf860d4a_0 is excluded by strict repo priority
  - package libdb-6.2.32-hf484d3e_0 is excluded by strict repo priority
  - package libdeflate-1.17-h5eee18b_1 is excluded by strict repo priority
  - package munkres-1.1.4-py_0 is excluded by strict repo priority
  - package r-bh-1.84.0_0-r43hc72bb7e_0 is excluded by strict repo priority
  - package r-bit-4.0.5-r43h76d94ec_0 is excluded by strict repo priority
  - package r-bit64-4.0.5-r43h76d94ec_0 is excluded by strict repo priority
  - package r-checkmate-2.3.0-r43h76d94ec_0 is excluded by strict repo priority
  - package r-data.table-1.15.2-r43h029312a_0 is excluded by strict repo priority
  - package r-deldir-2.0_4-r43h61816a4_0 is excluded by strict repo priority
  - package r-digest-0.6.34-r43ha503ecb_0 is excluded by strict repo priority
  - package r-dorng-1.8.6-r43h142f84f_0 is excluded by strict repo priority
  - package r-dplyr-1.1.4-r43ha503ecb_0 is excluded by strict repo priority
  - package r-e1071-1.7_14-r43ha503ecb_0 is excluded by strict repo priority
  - package r-fnn-1.1.4-r43ha503ecb_0 is excluded by strict repo priority
  - package r-futile.logger-1.4.3-r43h6115d3f_0 is excluded by strict repo priority
  - package r-futile.options-1.0.1-r42h142f84f_0 is excluded by strict repo priority
  - package r-ggplot2-3.5.0-r43hc72bb7e_0 is excluded by strict repo priority
  - package r-ggrepel-0.9.5-r43ha503ecb_0 is excluded by strict repo priority
  - package r-htmltools-0.5.7-r43ha503ecb_0 is excluded by strict repo priority
  - package r-htmlwidgets-1.6.4-r43hc72bb7e_1 is excluded by strict repo priority
  - package r-hwriter-1.3.2.1-r42h142f84f_0 is excluded by strict repo priority
  - package r-jpeg-0.1_10-r43h76d94ec_1 is excluded by strict repo priority
  - package r-jsonlite-1.8.8-r43h57805ef_0 is excluded by strict repo priority
  - package r-knitr-1.45-r43hc72bb7e_1 is excluded by strict repo priority
  - package r-lambda.r-1.2.4-r42h142f84f_0 is excluded by strict repo priority
  - package r-magrittr-2.0.3-r43h76d94ec_0 is excluded by strict repo priority
  - package r-permute-0.9_7-r42h142f84f_0 is excluded by strict repo priority
  - package r-pheatmap-1.0.12-r42h142f84f_0 is excluded by strict repo priority
  - package r-png-0.1_8-r43h76d94ec_0 is excluded by strict repo priority
  - package r-prettyunits-1.2.0-r43h142f84f_0 is excluded by strict repo priority
  - package r-progress-1.2.3-r43hc72bb7e_0 is excluded by strict repo priority
  - package r-proxy-0.4_27-r43h76d94ec_0 is excluded by strict repo priority
  - package r-rappdirs-0.3.3-r43h76d94ec_0 is excluded by strict repo priority
  - package r-rcppparallel-5.1.6-r43ha503ecb_1 is excluded by strict repo priority
  - package r-readr-2.1.5-r43ha503ecb_0 is excluded by strict repo priority
  - package r-rematch2-2.1.2-r42h142f84f_0 is excluded by strict repo priority
  - package r-rmarkdown-2.25-r43h6115d3f_0 is excluded by strict repo priority
  - package r-rtsne-0.17-r43h7ce84a7_0 is excluded by strict repo priority
  - package r-scales-1.3.0-r43hc72bb7e_0 is excluded by strict repo priority
  - package r-snow-0.4_4-r42h142f84f_0 is excluded by strict repo priority
  - package r-statmod-1.5.0-r43h640688f_0 is excluded by strict repo priority
  - package r-stringr-1.5.1-r43h785f33e_0 is excluded by strict repo priority
  - package r-tibble-3.2.1-r43h76d94ec_0 is excluded by strict repo priority
  - package r-vegan-2.6_4-r43h640688f_0 is excluded by strict repo priority
  - package r-viridis-0.6.5-r43hc72bb7e_0 is excluded by strict repo priority
  - package r-yaml-2.3.8-r43h57805ef_0 is excluded by strict repo priority
  - package simplejson-3.19.2-py39hf860d4a_0 is excluded by strict repo priority
  - package xopen-1.9.0-py39hf3d152e_0 is excluded by strict repo priority
  - package libnghttp2-1.52.0-h61bc06f_0 requires openssl >=3.0.8,<4.0a0, but none of the providers can be installed
  - package htslib-1.17-h6bc39ce_0 requires openssl >=1.1.1t,<1.1.2a, but none of the providers can be installed
  - package bioconductor-biomformat-1.26.0-r42hdfd78af_0 requires bioconductor-rhdf5 >=2.42.0,<2.43.0, but none of the providers can be installed

@splaisan
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apparently due to my strict config status, solved by changing it to flexible with:

conda config --set channel_priority flexible then re-running the install command

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