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Hi,
I am trying to read an SBML file into pysb using the model_from_sbml function. An example of the code I am running is as follows: from pysb.importers.sbml import model_from_sbml pysb_model = model_from_sbml("sampleNetwork-1.xml")
When running this I get an error that reads: SympifyError: SympifyError: 'time'
I've checked my SBML file with an online SBML validator http://sbml.org/Facilities/Validator and it appears to be valid. Could you please check if this is a bug? I've attached the SBML file I am using below.
PySB doesn't support explicit time in mathematical expressions yet, but the team just discussed it and we devloped an implementation plan. I've added an issue to track this at #534. We have a few other things in the pipeline right now but will get to this feature fairly soon.
Hi,
I am trying to read an SBML file into pysb using the model_from_sbml function. An example of the code I am running is as follows:
from pysb.importers.sbml import model_from_sbml pysb_model = model_from_sbml("sampleNetwork-1.xml")
When running this I get an error that reads: SympifyError: SympifyError: 'time'
I've checked my SBML file with an online SBML validator http://sbml.org/Facilities/Validator and it appears to be valid. Could you please check if this is a bug? I've attached the SBML file I am using below.
sampleNetwork-1.zip
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