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laughing-nemesis

laughing-nemesis in a set of utilities to analyse metagenomic assemblies processed by RayMeta. It is mainly coded in python 2.7. Python 3 was not tested.

Tools

These are the tools currently available. They can all be called directly from lauging-nemesis.py. Use lauging-nemesis.py -h for help

FindLastCommonAncester.py

Identification of the last common ancester of a contig in the taxonomic tree based on RayMeta coloring algorithm. It is required to prepare the taxonomic tree before processing the contigs.

FindContigsIdWithBiologicalAbundance.py

Identification of the X best matching sequences for each assembled and coloried contig

PlotBiologicalAbundance.py

Quickly plot any taxonomic distribution file.

Code repositorie

https://github.com/plpla/laughing-nemesis

Version

0.1

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Script and pipelines to analyse metagenomic datas from MetaRay

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