/
NAMESPACE
126 lines (125 loc) · 3.16 KB
/
NAMESPACE
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
# Generated by roxygen2: do not edit by hand
S3method(as.phenotype,data.frame)
S3method(as.phenotype,default)
S3method(as.terminfo,data.frame)
S3method(as.terminfo,default)
S3method(as.terminfo,terminfo)
S3method(charstates,data.frame)
S3method(charstates,default)
S3method(charstates,list)
S3method(charstates,phenotype)
S3method(print,KBinfo)
S3method(print,phenotype)
S3method(print,terminfo)
S3method(rclean_jsonld_names,data.frame)
S3method(rclean_jsonld_names,default)
S3method(rclean_jsonld_names,list)
export(add_provenance_record)
export(anatomy_ontology_iris)
export(anatomy_term_info)
export(as.owl)
export(as.phenotype)
export(as.terminfo)
export(bestPairs)
export(chars)
export(charstates)
export(corpus_size)
export(cosine_similarity)
export(developsFrom_iri)
export(find_term)
export(gene_info)
export(get_KBinfo)
export(get_char_matrix)
export(get_char_matrix_meta)
export(get_ontotrace_data)
export(get_phenotypes)
export(get_studies)
export(get_study_data)
export(get_term_iri)
export(get_term_label)
export(hasPart_iri)
export(is.manchester_owl)
export(is.owl)
export(is.phenotype)
export(is.terminfo)
export(is_ancestor)
export(is_descendant)
export(is_extinct)
export(is_unused_char)
export(is_unused_otu)
export(is_valid_phenotype)
export(is_valid_terminfo)
export(jaccard_similarity)
export(mutually_exclusive)
export(nexml_drop_char)
export(nexml_drop_otu)
export(obo_prefix)
export(pa_dep_matrix)
export(partOf_iri)
export(phenotype_matches)
export(phenotypic_quality_term_info)
export(pk_anatomical_class)
export(pk_anatomical_detail)
export(pk_gene_detail)
export(pk_get_iri)
export(pk_get_ontotrace)
export(pk_get_ontotrace_meta)
export(pk_get_ontotrace_xml)
export(pk_get_study)
export(pk_get_study_list)
export(pk_get_study_meta)
export(pk_get_study_xml)
export(pk_is_ancestor)
export(pk_is_descendant)
export(pk_is_extinct)
export(pk_phenotype_class)
export(pk_phenotype_detail)
export(pk_taxon_class)
export(pk_taxon_detail)
export(profile_similarity)
export(rclean_jsonld_names)
export(reduce.ignoringDiag)
export(resnik_similarity)
export(state_symbols2labels)
export(subsumer_matrix)
export(tanimoto_similarity)
export(taxon_info)
export(taxon_ontology_iris)
export(term_category)
export(term_classification)
export(term_freqs)
export(term_iri)
export(terminfo)
importClassesFrom(RNeXML,nexml)
importFrom(RNeXML,add_meta)
importFrom(RNeXML,expand_prefix)
importFrom(RNeXML,get_characters)
importFrom(RNeXML,get_level)
importFrom(RNeXML,get_metadata)
importFrom(RNeXML,get_metadata_values)
importFrom(RNeXML,get_namespaces)
importFrom(RNeXML,get_taxa)
importFrom(RNeXML,meta)
importFrom(RNeXML,nexml)
importFrom(RNeXML,nexml_read)
importFrom(dplyr,"%>%")
importFrom(dplyr,all_vars)
importFrom(dplyr,filter)
importFrom(dplyr,filter_at)
importFrom(dplyr,inner_join)
importFrom(dplyr,rename)
importFrom(dplyr,select)
importFrom(httr,GET)
importFrom(httr,POST)
importFrom(httr,content)
importFrom(jsonlite,fromJSON)
importFrom(jsonlite,toJSON)
importFrom(methods,is)
importFrom(methods,new)
importFrom(methods,slot)
importFrom(methods,slotNames)
importFrom(rlang,expr)
importFrom(stringi,stri_match_first_regex)
importFrom(utils,packageName)
importFrom(utils,packageVersion)
importFrom(utils,read.csv)