{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":698534038,"defaultBranch":"main","name":"bigwig-loader","ownerLogin":"pfizer-opensource","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2023-09-30T07:41:28.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/83447221?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1713094913.0","currentOid":""},"activityList":{"items":[{"before":"4ac333829a774af774f540c2f4b27a0f215be17c","after":"5c3e9556caff0a58b8d019f04a96d02c295f1f5a","ref":"refs/heads/feature/scale_values","pushedAt":"2024-04-15T13:26:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jorenretel","name":"Joren Retel","path":"/jorenretel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3398263?s=80&v=4"},"commit":{"message":"Add scaling feature that also works before selecting intervals by thresholding. Without this change the threshold was applied to the unscaled values. When using bigwig files where the values should be re-scaled for machine learning you might want to select the \"regions of interest\" by thresholding on the scaled values.","shortMessageHtmlLink":"Add scaling feature that also works before selecting intervals by thr…"}},{"before":null,"after":"4ac333829a774af774f540c2f4b27a0f215be17c","ref":"refs/heads/feature/scale_values","pushedAt":"2024-04-14T11:41:53.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"jorenretel","name":"Joren Retel","path":"/jorenretel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3398263?s=80&v=4"},"commit":{"message":"work in progress","shortMessageHtmlLink":"work in progress"}},{"before":"ff08255431749f669eac554d0a4af00b9a2b632e","after":null,"ref":"refs/heads/feature/moving_average","pushedAt":"2024-04-14T10:38:05.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"jorenretel","name":"Joren Retel","path":"/jorenretel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3398263?s=80&v=4"}},{"before":"52bbceb1f5a22661110df49f800e7f91f6bbce01","after":"ac63c510057380ef51775927de642ecab8e8942a","ref":"refs/heads/main","pushedAt":"2024-04-14T10:38:00.000Z","pushType":"pr_merge","commitsCount":5,"pusher":{"login":"jorenretel","name":"Joren Retel","path":"/jorenretel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3398263?s=80&v=4"},"commit":{"message":"Merge pull request #6 from pfizer-opensource/feature/moving_average\n\nadd feature to smooth tracks with moving average","shortMessageHtmlLink":"Merge pull request #6 from pfizer-opensource/feature/moving_average"}},{"before":"f0786dcd1c640eec54407f766239ac6dbda452ce","after":"ff08255431749f669eac554d0a4af00b9a2b632e","ref":"refs/heads/feature/moving_average","pushedAt":"2024-04-14T08:31:32.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"jorenretel","name":"Joren Retel","path":"/jorenretel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3398263?s=80&v=4"},"commit":{"message":"Merge branch 'main' into feature/moving_average","shortMessageHtmlLink":"Merge branch 'main' into feature/moving_average"}},{"before":"4c04dd8f32001d0d0509be99913226f8561dbe6f","after":null,"ref":"refs/heads/use-upstream-kvikio","pushedAt":"2024-04-14T08:28:06.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"jorenretel","name":"Joren Retel","path":"/jorenretel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3398263?s=80&v=4"}},{"before":"6fc290aab3e02fd9753d22dca5f59d35e0cd0e62","after":"52bbceb1f5a22661110df49f800e7f91f6bbce01","ref":"refs/heads/main","pushedAt":"2024-04-14T08:27:38.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"jorenretel","name":"Joren Retel","path":"/jorenretel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3398263?s=80&v=4"},"commit":{"message":"Merge pull request #7 from pfizer-opensource/use-upstream-kvikio\n\nenv: use upstream kvikio after deflate support was merged","shortMessageHtmlLink":"Merge pull request #7 from pfizer-opensource/use-upstream-kvikio"}},{"before":"8aa183a0d7c0f08a41e1d9b0df8db52522fa7784","after":null,"ref":"refs/heads/feature/reset_gpu","pushedAt":"2024-04-14T08:12:20.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"jorenretel","name":"Joren Retel","path":"/jorenretel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3398263?s=80&v=4"}},{"before":null,"after":"4c04dd8f32001d0d0509be99913226f8561dbe6f","ref":"refs/heads/use-upstream-kvikio","pushedAt":"2024-04-10T15:07:43.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"ap--","name":"Andreas Poehlmann","path":"/ap--","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1463443?s=80&v=4"},"commit":{"message":"env: use upstream kvikio after deflate support was merged\n\nDeflate codec support was added upstream in rapidsai/kvikio#364","shortMessageHtmlLink":"env: use upstream kvikio after deflate support was merged"}},{"before":"fbf3072c51aa57ff99d1dc0f76d89ed7c73b0699","after":"f0786dcd1c640eec54407f766239ac6dbda452ce","ref":"refs/heads/feature/moving_average","pushedAt":"2024-04-09T20:19:34.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jorenretel","name":"Joren Retel","path":"/jorenretel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3398263?s=80&v=4"},"commit":{"message":"Don't need padding before convolution.","shortMessageHtmlLink":"Don't need padding before convolution."}},{"before":"86bcfcf7abbdb89408b2a745eaa9498e0dfc6c9c","after":"fbf3072c51aa57ff99d1dc0f76d89ed7c73b0699","ref":"refs/heads/feature/moving_average","pushedAt":"2024-04-09T19:49:46.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"jorenretel","name":"Joren Retel","path":"/jorenretel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3398263?s=80&v=4"},"commit":{"message":"Merge branch 'main' into feature/moving_average","shortMessageHtmlLink":"Merge branch 'main' into feature/moving_average"}},{"before":"497691f5ae98b18f25aef800fdd7cd7a64102d0a","after":"6fc290aab3e02fd9753d22dca5f59d35e0cd0e62","ref":"refs/heads/main","pushedAt":"2024-04-09T19:46:48.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jorenretel","name":"Joren Retel","path":"/jorenretel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3398263?s=80&v=4"},"commit":{"message":"Try to get rid of mypy error on gh actions for not finding library stubs of bigwig_loader.subtract_intervals","shortMessageHtmlLink":"Try to get rid of mypy error on gh actions for not finding library st…"}},{"before":null,"after":"86bcfcf7abbdb89408b2a745eaa9498e0dfc6c9c","ref":"refs/heads/feature/moving_average","pushedAt":"2024-04-09T19:40:00.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"jorenretel","name":"Joren Retel","path":"/jorenretel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3398263?s=80&v=4"},"commit":{"message":"add feature to smooth tracks with moving average","shortMessageHtmlLink":"add feature to smooth tracks with moving average"}},{"before":"fcd91c94550de6fbc6bcee5349d8005a087b0e9c","after":null,"ref":"refs/heads/feature/blacklist_regions","pushedAt":"2024-04-09T12:16:09.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"jorenretel","name":"Joren Retel","path":"/jorenretel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3398263?s=80&v=4"}},{"before":"aadb10ff57891f22671bf9d328df94a8fe42d36b","after":"497691f5ae98b18f25aef800fdd7cd7a64102d0a","ref":"refs/heads/main","pushedAt":"2024-04-09T12:16:05.000Z","pushType":"pr_merge","commitsCount":10,"pusher":{"login":"jorenretel","name":"Joren Retel","path":"/jorenretel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3398263?s=80&v=4"},"commit":{"message":"Merge pull request #5 from pfizer-opensource/feature/blacklist_regions\n\nFeature/blacklist regions","shortMessageHtmlLink":"Merge pull request #5 from pfizer-opensource/feature/blacklist_regions"}},{"before":"fe37f8093238e07a538e421f8d091c84754ac691","after":"fcd91c94550de6fbc6bcee5349d8005a087b0e9c","ref":"refs/heads/feature/blacklist_regions","pushedAt":"2024-04-09T08:56:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jorenretel","name":"Joren Retel","path":"/jorenretel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3398263?s=80&v=4"},"commit":{"message":"allow padding around intervals. Also subtract blacklist from padded result to make sure not to reintroduce blacklisted regions.","shortMessageHtmlLink":"allow padding around intervals. Also subtract blacklist from padded r…"}},{"before":"af443665f0b3e19b397a743334cd4e7d7cc0a11f","after":"fe37f8093238e07a538e421f8d091c84754ac691","ref":"refs/heads/feature/blacklist_regions","pushedAt":"2024-04-08T13:04:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jorenretel","name":"Joren Retel","path":"/jorenretel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3398263?s=80&v=4"},"commit":{"message":"Rename blacklist_intervals to simpler \"blacklist\"","shortMessageHtmlLink":"Rename blacklist_intervals to simpler \"blacklist\""}},{"before":"f89757ce60f5117f84ad85056958c18338190da7","after":"af443665f0b3e19b397a743334cd4e7d7cc0a11f","ref":"refs/heads/feature/blacklist_regions","pushedAt":"2024-04-08T11:37:05.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jorenretel","name":"Joren Retel","path":"/jorenretel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3398263?s=80&v=4"},"commit":{"message":"Expose subtract blacklist functionality to Collection API.","shortMessageHtmlLink":"Expose subtract blacklist functionality to Collection API."}},{"before":"7c2f97f0f9af722827e7d47a67af32c983225b62","after":"f89757ce60f5117f84ad85056958c18338190da7","ref":"refs/heads/feature/blacklist_regions","pushedAt":"2024-04-08T09:43:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jorenretel","name":"Joren Retel","path":"/jorenretel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3398263?s=80&v=4"},"commit":{"message":"Adding more docstring","shortMessageHtmlLink":"Adding more docstring"}},{"before":"9e69458eca74f677794259bfa90c0ecacfbce4bc","after":"7c2f97f0f9af722827e7d47a67af32c983225b62","ref":"refs/heads/feature/blacklist_regions","pushedAt":"2024-04-08T09:41:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jorenretel","name":"Joren Retel","path":"/jorenretel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3398263?s=80&v=4"},"commit":{"message":"Making sure result of blacklisting is as expected by doing test on longer sequence of randomly generated intervals","shortMessageHtmlLink":"Making sure result of blacklisting is as expected by doing test on lo…"}},{"before":"82e538e0ca1392885f96499262b0ad1c148622d4","after":"9e69458eca74f677794259bfa90c0ecacfbce4bc","ref":"refs/heads/feature/blacklist_regions","pushedAt":"2024-04-08T09:03:33.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jorenretel","name":"Joren Retel","path":"/jorenretel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3398263?s=80&v=4"},"commit":{"message":"Bugfix blacklist intervals","shortMessageHtmlLink":"Bugfix blacklist intervals"}},{"before":"db59c9d29f26a51d8fdd7953a27a72e34ec27cb6","after":"82e538e0ca1392885f96499262b0ad1c148622d4","ref":"refs/heads/feature/blacklist_regions","pushedAt":"2024-04-05T13:40:18.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"jorenretel","name":"Joren Retel","path":"/jorenretel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3398263?s=80&v=4"},"commit":{"message":"take into account chromosomes","shortMessageHtmlLink":"take into account chromosomes"}},{"before":null,"after":"db59c9d29f26a51d8fdd7953a27a72e34ec27cb6","ref":"refs/heads/feature/blacklist_regions","pushedAt":"2024-04-04T15:56:19.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"jorenretel","name":"Joren Retel","path":"/jorenretel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3398263?s=80&v=4"},"commit":{"message":"first strategy. Not handy.","shortMessageHtmlLink":"first strategy. Not handy."}},{"before":"c747ef320f6773f0fd7227df31e13c11e0de911e","after":"aadb10ff57891f22671bf9d328df94a8fe42d36b","ref":"refs/heads/main","pushedAt":"2024-04-04T09:22:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jorenretel","name":"Joren Retel","path":"/jorenretel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3398263?s=80&v=4"},"commit":{"message":"Add bibtext","shortMessageHtmlLink":"Add bibtext"}},{"before":"ba8593d5b24d30ea28f005622686fb5f1155ec77","after":"c747ef320f6773f0fd7227df31e13c11e0de911e","ref":"refs/heads/main","pushedAt":"2024-04-04T09:11:26.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jorenretel","name":"Joren Retel","path":"/jorenretel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3398263?s=80&v=4"},"commit":{"message":"Finish sentence....","shortMessageHtmlLink":"Finish sentence...."}},{"before":"af5d96f7156cbe519413d78647b36e7c2e8aa4e1","after":"ba8593d5b24d30ea28f005622686fb5f1155ec77","ref":"refs/heads/main","pushedAt":"2024-04-04T09:10:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jorenretel","name":"Joren Retel","path":"/jorenretel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3398263?s=80&v=4"},"commit":{"message":"Add citation information","shortMessageHtmlLink":"Add citation information"}},{"before":"2a1dd485a92b8cd014465effed96216b87b4e9d6","after":"af5d96f7156cbe519413d78647b36e7c2e8aa4e1","ref":"refs/heads/main","pushedAt":"2024-01-29T15:18:13.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"jorenretel","name":"Joren Retel","path":"/jorenretel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3398263?s=80&v=4"},"commit":{"message":"Merge pull request #4 from pfizer-opensource/feature/reset_gpu\n\nDon't try to delete from dict when key is not present.","shortMessageHtmlLink":"Merge pull request #4 from pfizer-opensource/feature/reset_gpu"}},{"before":null,"after":"8aa183a0d7c0f08a41e1d9b0df8db52522fa7784","ref":"refs/heads/feature/reset_gpu","pushedAt":"2024-01-29T15:18:00.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"jorenretel","name":"Joren Retel","path":"/jorenretel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3398263?s=80&v=4"},"commit":{"message":"Don't try to delete from dict when key is not present.","shortMessageHtmlLink":"Don't try to delete from dict when key is not present."}},{"before":"d2f01802be9288efe391a567077283d04d0982f9","after":null,"ref":"refs/heads/interval_to_values_with_mean","pushedAt":"2024-01-26T14:43:11.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"jorenretel","name":"Joren Retel","path":"/jorenretel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3398263?s=80&v=4"}},{"before":"aaccbc1e8a6887c975df914f07c1cfabeaf8ad5d","after":null,"ref":"refs/heads/feature/reset_gpu","pushedAt":"2024-01-26T14:43:06.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"jorenretel","name":"Joren Retel","path":"/jorenretel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3398263?s=80&v=4"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEMPbEtAA","startCursor":null,"endCursor":null}},"title":"Activity · pfizer-opensource/bigwig-loader"}