{"payload":{"pageCount":1,"repositories":[{"type":"Public","name":"stimwrap","owner":"rajewsky-lab","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":5,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-24T05:26:09.518Z"}},{"type":"Public","name":"spacemake","owner":"rajewsky-lab","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":6,"issueCount":6,"starsCount":35,"forksCount":9,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-23T10:51:53.599Z"}},{"type":"Public","name":"openst","owner":"rajewsky-lab","isFork":false,"description":"Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab","topicNames":["bioinformatics","omics","transcriptomics","spatial-transcriptomics"],"topicsNotShown":0,"allTopics":["bioinformatics","omics","transcriptomics","spatial-transcriptomics"],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":1,"issueCount":5,"starsCount":28,"forksCount":7,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-22T09:27:07.589Z"}},{"type":"Public","name":"Huntington_midbrain_organoids","owner":"rajewsky-lab","isFork":false,"description":"Code related to single cell transcriptomic analyses in the manuscript 'Mutant Huntingtin impairs neurodevelopment in human brain organoids through CHCHD2-mediated neurometabolic failure'","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,0,1,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-20T15:35:35.526Z"}},{"type":"Public","name":"HSV1_cerebral_organoids","owner":"rajewsky-lab","isFork":false,"description":"Code related to the manuscript 'Modelling viral encephalitis caused by herpes simplex virus 1 infection in cerebral organoids'","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-11T14:58:52.487Z"}},{"type":"Public","name":".github","owner":"rajewsky-lab","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":null,"pullRequestCount":1,"issueCount":0,"starsCount":0,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-09T10:43:49.704Z"}},{"type":"Public","name":"mirdeep2","owner":"rajewsky-lab","isFork":false,"description":"Discovering known and novel miRNAs from small RNA sequencing data","topicNames":["analysis","mapping","sequencing","prediction","quantification","mirna","smallrna","microrna"],"topicsNotShown":0,"allTopics":["analysis","mapping","sequencing","prediction","quantification","mirna","smallrna","microrna"],"primaryLanguage":{"name":"Perl","color":"#0298c3"},"pullRequestCount":1,"issueCount":3,"starsCount":130,"forksCount":50,"license":"GNU General Public License v3.0","participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-11-23T19:23:21.343Z"}},{"type":"Public","name":"novosparc","owner":"rajewsky-lab","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":4,"issueCount":8,"starsCount":126,"forksCount":43,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-11-17T09:23:05.787Z"}},{"type":"Public","name":"Eskrate","owner":"rajewsky-lab","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":1,"issueCount":0,"starsCount":2,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-08-30T12:16:16.585Z"}},{"type":"Public","name":"optocoder","owner":"rajewsky-lab","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":3,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-11-29T21:58:57.138Z"}},{"type":"Public","name":"octopus_microRNAs","owner":"rajewsky-lab","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-11-13T20:09:21.109Z"}},{"type":"Public","name":"novosparc_workshop","owner":"rajewsky-lab","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":2,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-06-01T09:44:50.469Z"}},{"type":"Public","name":"optocoder_scripts","owner":"rajewsky-lab","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-04-29T12:40:48.452Z"}},{"type":"Public","name":"spacemake-test-data","owner":"rajewsky-lab","isFork":false,"description":"Collection of optional sequencing read data for spacemake testing.","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-03-24T11:51:17.924Z"}},{"type":"Public","name":"FLAMAnalysis","owner":"rajewsky-lab","isFork":false,"description":"Data Analysis For FLAM-Seq Third Generation RNA Sequencing","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":2,"starsCount":7,"forksCount":3,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-01-22T07:27:07.557Z"}},{"type":"Public","name":"SLAM-Drop-seq","owner":"rajewsky-lab","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-01-20T14:27:43.471Z"}},{"type":"Public","name":"distmap","owner":"rajewsky-lab","isFork":false,"description":"DistMap","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":13,"forksCount":10,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-11-23T13:57:55.582Z"}},{"type":"Public archive","name":"SPACEGERM","owner":"rajewsky-lab","isFork":false,"description":"SPACEGERM shiny app (archived, see GitLab for active fork)","topicNames":["shiny-apps","spatial-clustering","gene-expression-profiles","virtual-in-situ-hybridization"],"topicsNotShown":0,"allTopics":["shiny-apps","spatial-clustering","gene-expression-profiles","virtual-in-situ-hybridization"],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":1,"starsCount":0,"forksCount":0,"license":"GNU Affero General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-11-09T07:46:07.805Z"}},{"type":"Public","name":"helpers","owner":"rajewsky-lab","isFork":false,"description":"'useful' little helper scripts for the day-to-day life in the N. Rajewsky dry lab","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Perl","color":"#0298c3"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"GNU Affero General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-09-28T05:58:07.767Z"}},{"type":"Public","name":"planarian_lineages","owner":"rajewsky-lab","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":3,"starsCount":25,"forksCount":7,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-04-18T21:53:20.984Z"}},{"type":"Public","name":"dropbead","owner":"rajewsky-lab","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":6,"starsCount":6,"forksCount":8,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-02-21T21:01:32.211Z"}},{"type":"Public","name":"byo","owner":"rajewsky-lab","isFork":false,"description":"python library for efficient low-level stuff to access all kinds of data and cool high level things like transcripts, splicing, etc.","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2016-11-27T05:20:44.511Z"}},{"type":"Public","name":"PyMAF","owner":"rajewsky-lab","isFork":false,"description":"Easy handling of MAF files and many genomes","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":1,"forksCount":1,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2016-11-27T05:15:47.146Z"}},{"type":"Public","name":"polyA","owner":"rajewsky-lab","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":14,"starsCount":0,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2016-09-12T14:20:26.723Z"}},{"type":"Public","name":"bioanalyzer-profile","owner":"rajewsky-lab","isFork":false,"description":"Analyze raw data from bioanalyzer","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2016-09-12T13:09:25.121Z"}},{"type":"Public","name":"find_circ2","owner":"rajewsky-lab","isFork":false,"description":"Find circRNAs in RNA-seq data.","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":13,"forksCount":6,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2016-07-05T15:08:05.892Z"}},{"type":"Public","name":"find_circ","owner":"rajewsky-lab","isFork":false,"description":"Find circRNAs in RNA-seq data.","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":3,"forksCount":1,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2016-03-03T17:37:28.055Z"}},{"type":"Public","name":"clip_analysis","owner":"rajewsky-lab","isFork":true,"description":"Scripts to analyze (PAR-)CLIP data.","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":5,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2015-03-09T17:54:17.086Z"}}],"repositoryCount":28,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"Repositories"}