{"payload":{"pageCount":4,"repositories":[{"type":"Public","name":"plaid","owner":"pharmbio","isFork":false,"description":"PLAID (Plate Layouts using Artificial Intelligence Design) is a flexible constraint-programming model representing the Plate Layout Design problem. ","topicNames":["artificial-intelligence","constraint-programming","plaid","experimental-design","microplate-design","multiplate-layout-design"],"topicsNotShown":0,"allTopics":["artificial-intelligence","constraint-programming","plaid","experimental-design","microplate-design","multiplate-layout-design"],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":12,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-24T15:45:20.923Z"}},{"type":"Public","name":"cp_pipeline","owner":"pharmbio","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-24T09:45:19.771Z"}},{"type":"Public","name":"pipelinegui","owner":"pharmbio","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"JavaScript","color":"#f1e05a"},"pullRequestCount":0,"issueCount":1,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-24T09:43:12.371Z"}},{"type":"Public","name":"pharmbio-web","owner":"pharmbio","isFork":false,"description":"The Static (Hugo) website for pharmb.io","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"JavaScript","color":"#f1e05a"},"pullRequestCount":3,"issueCount":0,"starsCount":3,"forksCount":8,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-20T06:33:41.677Z"}},{"type":"Public","name":"imagedb","owner":"pharmbio","isFork":false,"description":"Image database for pharmbio microscope images","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"JavaScript","color":"#f1e05a"},"pullRequestCount":5,"issueCount":9,"starsCount":5,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-15T15:21:51.975Z"}},{"type":"Public","name":"Assignment_3a_LeukemiaCells","owner":"pharmbio","isFork":false,"description":"Easier paths leukemia cells BDLS Assignment 3.a","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-13T13:50:32.002Z"}},{"type":"Public","name":"big-data_deeplearning","owner":"pharmbio","isFork":false,"description":"Big data course, Deep learning repo","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-13T13:35:14.725Z"}},{"type":"Public","name":"SegMine","owner":"pharmbio","isFork":false,"description":"Playground for Segmentation and Data-mining","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-08T13:43:40.500Z"}},{"type":"Public","name":"rstudio-docker","owner":"pharmbio","isFork":false,"description":"Dockerfile for rstudio server with python support","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Dockerfile","color":"#384d54"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-01T19:35:08.885Z"}},{"type":"Public","name":"pharmbio-notebook","owner":"pharmbio","isFork":false,"description":"Docker containers for interactive notebook environments for rancher cluster","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Dockerfile","color":"#384d54"},"pullRequestCount":1,"issueCount":0,"starsCount":2,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-22T13:55:47.615Z"}},{"type":"Public","name":"big-data_course","owner":"pharmbio","isFork":false,"description":"Material for the Big Data in life science course","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"TeX","color":"#3D6117"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":3,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-16T08:44:50.029Z"}},{"type":"Public","name":"squid","owner":"pharmbio","isFork":true,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":2,"starsCount":1,"forksCount":32,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-15T12:25:43.362Z"}},{"type":"Public","name":"nw-cp","owner":"pharmbio","isFork":false,"description":"A master thesis on using Graph Neural Networks and Network Analysis approach in morphological profiling of chemical perturbated cells","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-04T15:26:37.952Z"}},{"type":"Public","name":"conformal-eval","owner":"pharmbio","isFork":true,"description":"Refactored version of the Plot_utils library, for generating a single installable distribution ","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":2,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-03T07:35:23.866Z"}},{"type":"Public","name":"SC_analysis_Benjamin","owner":"pharmbio","isFork":false,"description":"Main analysis scripts of sc master thesis","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-29T15:27:25.231Z"}},{"type":"Public","name":"DeepProfiler_Benjamin","owner":"pharmbio","isFork":false,"description":"DeepProfiler analysis scripts for RH30, Specs3k datasets","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-23T19:24:06.937Z"}},{"type":"Public","name":"cppipeline2","owner":"pharmbio","isFork":false,"description":"version 2 of cppipeline","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-13T10:35:08.266Z"}},{"type":"Public","name":"robotlab","owner":"pharmbio","isFork":false,"description":"Cell painting and imaging with robots","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":2,"starsCount":9,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-29T14:01:53.237Z"}},{"type":"Public","name":"cplogd-v2.0","owner":"pharmbio","isFork":false,"description":"cpLodD version 2.0 - using ChEMBL v33","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-05T13:55:54.334Z"}},{"type":"Public","name":"plot_utils","owner":"pharmbio","isFork":false,"description":"Repo that groups utility functions for e.g. plotting of Conformal prediction metrics","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":13,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-02T12:19:38.866Z"}},{"type":"Public","name":"pharmbio_package","owner":"pharmbio","isFork":false,"description":"A Python package automating routine pharmaceutical bioinformatics laboratory analyses and quality control checks.","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-24T11:00:31.439Z"}},{"type":"Public","name":"dorna-lab-automation","owner":"pharmbio","isFork":false,"description":"Server and WebGUI for Dorna control, built for the Laboratory Automation in Life Sciences course.","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"JavaScript","color":"#f1e05a"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-10-16T08:57:47.512Z"}},{"type":"Public","name":"labdesign","owner":"pharmbio","isFork":false,"description":"Software for design of (robot)-lab experiments","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"JavaScript","color":"#f1e05a"},"pullRequestCount":1,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-08-14T22:25:27.351Z"}},{"type":"Public","name":"pharmbio_LaTeX_templates","owner":"pharmbio","isFork":false,"description":"A series of LaTeX templates used by us","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"TeX","color":"#3D6117"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-07-07T12:53:18.390Z"}},{"type":"Public","name":"Nima_Msc_Presentation","owner":"pharmbio","isFork":false,"description":"Nima's Master thesis final presentation on Intersecting Graph Representation Learning and Cell Profiling.","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-07-04T07:41:13.308Z"}},{"type":"Public","name":"plaid-gui","owner":"pharmbio","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"JavaScript","color":"#f1e05a"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-04-24T15:45:36.898Z"}},{"type":"Public","name":"ULLA_AIinDD","owner":"pharmbio","isFork":false,"description":"ULLA AI in Drug Discovery course material","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"TeX","color":"#3D6117"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-04-17T07:21:36.846Z"}},{"type":"Public","name":"declis","owner":"pharmbio","isFork":false,"description":"DNA-encoded chemical library information system","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-03-09T08:45:32.139Z"}},{"type":"Public","name":"CP-Chem-MoA","owner":"pharmbio","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":7,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-02-21T10:34:03.226Z"}},{"type":"Public","name":"robotvision","owner":"pharmbio","isFork":false,"description":"Machine vision system project for automated biological lab.","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":8,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-02-16T04:13:05.045Z"}}],"repositoryCount":103,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"Repositories"}