{"payload":{"pageCount":1,"repositories":[{"type":"Public","name":"recount","owner":"leekgroup","isFork":false,"description":"R package for the recount2 project. Documentation website: <a href=\"http://leekgroup.github.io/recount/\" rel=\"nofollow\">http://leekgroup.github.io/recount/</a>","topicNames":["count","gene","r","human","rstats","rnaseq","deseq2","illumina","junction","derfinder"],"topicsNotShown":4,"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":2,"starsCount":40,"forksCount":9,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-03T13:36:42.910Z"}},{"type":"Public","name":"derfinderPlot","owner":"leekgroup","isFork":false,"description":"Plotting functions for derfinder results","topicNames":["rstats","bioconductor","rnaseq","r","derfinder"],"topicsNotShown":0,"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-03T13:35:52.526Z"}},{"type":"Public","name":"derfinderHelper","owner":"leekgroup","isFork":false,"description":"Helper package for derfinder","topicNames":["rstats","bioconductor","r","derfinder"],"topicsNotShown":0,"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-03T13:35:31.135Z"}},{"type":"Public","name":"derfinderData","owner":"leekgroup","isFork":false,"description":"Example data used by the derfinder and derfinderData Bioconductor packages","topicNames":["r","rstats","bioconductor","rnaseq","derfinder"],"topicsNotShown":0,"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-03T13:34:57.913Z"}},{"type":"Public","name":"recount-website","owner":"leekgroup","isFork":false,"description":"Code for the Recount project","topicNames":["r","rstats","bioconductor","rnaseq","annotation-agnostic","recount"],"topicsNotShown":0,"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":2,"starsCount":11,"forksCount":5,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-08-29T17:14:15.573Z"}},{"type":"Public","name":"regionReport","owner":"leekgroup","isFork":false,"description":"Generate HTML report for a set of genomic regions or DESeq2/edgeR results","topicNames":["r","rmarkdown","rstats","bioconductor","rnaseq","edger","regionreport","deseq2","derfinder"],"topicsNotShown":0,"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":1,"starsCount":9,"forksCount":4,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-05-07T05:37:14.020Z"}},{"type":"Public","name":"enrichedRanges","owner":"leekgroup","isFork":false,"description":"enrichedRanges","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-05-07T00:30:14.261Z"}},{"type":"Public","name":"postpi","owner":"leekgroup","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":1,"issueCount":0,"starsCount":21,"forksCount":4,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-10-29T01:19:19.081Z"}},{"type":"Public","name":"swfdr","owner":"leekgroup","isFork":false,"description":"Science-wise false discovery rate package","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":1,"starsCount":3,"forksCount":3,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-12-10T19:40:11.472Z"}},{"type":"Public","name":"phenopredict","owner":"leekgroup","isFork":false,"description":"Use gene expression to predict phenotype sample information","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":2,"starsCount":19,"forksCount":5,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-02-13T19:24:36.985Z"}},{"type":"Public","name":"genesigprecision","owner":"leekgroup","isFork":false,"description":"Code for reproducing analysis for \"Measuring the contribution of genomic...\"","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2015-12-10T17:10:05.905Z"}},{"type":"Public","name":"sig2trial","owner":"leekgroup","isFork":false,"description":"Pipeline R package for creating simple gene signatures and testing their value in a clinical trial setting","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":6,"starsCount":2,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2015-11-20T21:28:09.137Z"}},{"type":"Public","name":"Set","owner":"leekgroup","isFork":false,"description":"Set package","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2015-04-28T00:13:50.274Z"}},{"type":"Public","name":"derfinder","owner":"leekgroup","isFork":false,"description":"R package for DER Finder, a method for differential expression analysis of RNA-seq data","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":1,"issueCount":4,"starsCount":21,"forksCount":11,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2015-03-06T07:06:30.288Z"}},{"type":"Public","name":"testsetbias","owner":"leekgroup","isFork":false,"description":"Materials to reproduce test set bias analysis.","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":4,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2015-02-13T18:00:27.962Z"}},{"type":"Public","name":"ballgown_code","owner":"leekgroup","isFork":false,"description":"analysis code used in Ballgown paper","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":8,"forksCount":8,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2014-12-04T05:58:23.619Z"}}],"repositoryCount":16,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"mirror","text":"Mirrors"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"Repositories"}