{"payload":{"pageCount":6,"repositories":[{"type":"Public","name":"scrumlord","owner":"greenelab","isFork":false,"description":"Continuous administration of the Greene Lab's electronic scrum","topicNames":["administration","cron","travis-ci","scrum","continuous"],"topicsNotShown":0,"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":2,"starsCount":12,"forksCount":8,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-03T22:42:07.662Z"}},{"type":"Public","name":"greenelab.com","owner":"greenelab","isFork":false,"description":"The website source code for greenelab.com","topicNames":["jekyll","website","lab","greenelab"],"topicsNotShown":0,"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":1,"starsCount":1,"forksCount":25,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-29T14:42:18.443Z"}},{"type":"Public","name":"aml_cfdna_atac","owner":"greenelab","isFork":false,"description":"Using BuDDI to integrate cfDNA and ATAC data from AML samples to identify cell of origin","topicNames":[],"topicsNotShown":0,"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-24T21:18:55.428Z"}},{"type":"Public","name":"buddi_atac","owner":"greenelab","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"primaryLanguage":null,"pullRequestCount":1,"issueCount":0,"starsCount":0,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-24T21:09:57.880Z"}},{"type":"Public","name":"lab-website-template-docs","owner":"greenelab","isFork":false,"description":"GitBook documentation for Lab Website Template","topicNames":[],"topicsNotShown":0,"primaryLanguage":null,"pullRequestCount":1,"issueCount":1,"starsCount":0,"forksCount":1,"license":null,"participation":[0,0,0,1,0,0,0,0,0,1,0,2,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,0,0,1,1,2,0,1,0,1,1,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-22T20:24:51.743Z"}},{"type":"Public template","name":"lab-website-template","owner":"greenelab","isFork":false,"description":"An easy-to-use, flexible website template for labs.","topicNames":["template","website","lab"],"topicsNotShown":0,"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":1,"issueCount":12,"starsCount":277,"forksCount":264,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-22T20:22:49.385Z"}},{"type":"Public","name":"ccc","owner":"greenelab","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":1,"issueCount":1,"starsCount":15,"forksCount":5,"license":"Other","participation":[0,4,0,0,0,0,0,0,0,0,0,0,0,5,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,6,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-19T17:55:05.060Z"}},{"type":"Public","name":"pred_missing_celltypes","owner":"greenelab","isFork":false,"description":"Predicting missing cell-type proportions from deconvolution residual using NNLS.","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":1,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-18T23:01:09.298Z"}},{"type":"Public","name":"single_translator_VAE","owner":"greenelab","isFork":false,"description":"Implementation of a VAE in scvi-tools for single-cell and single-nucleus translation.","topicNames":[],"topicsNotShown":0,"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-18T19:00:18.775Z"}},{"type":"Public","name":"word-lapse","owner":"greenelab","isFork":false,"description":"Explore how a word changes over time","topicNames":["react","machine-learning","natural-language-processing"],"topicsNotShown":0,"primaryLanguage":{"name":"JavaScript","color":"#f1e05a"},"pullRequestCount":0,"issueCount":2,"starsCount":6,"forksCount":3,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-17T21:11:38.680Z"}},{"type":"Public","name":"buddi","owner":"greenelab","isFork":false,"description":"BuDDI model implementation","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":0,"starsCount":0,"forksCount":2,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-10T20:49:29.643Z"}},{"type":"Public","name":"buddi_analysis","owner":"greenelab","isFork":false,"description":"Analysis notebooks for the BuDDI manuscript","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":9,"starsCount":0,"forksCount":2,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-10T18:53:40.157Z"}},{"type":"Public","name":"phenoplier","owner":"greenelab","isFork":false,"description":"PhenoPLIER","topicNames":["tool","software","unsupervised-learning","complex-traits","twas","gene-modules"],"topicsNotShown":0,"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":6,"starsCount":11,"forksCount":5,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-08T20:01:38.863Z"}},{"type":"Public","name":"manubot-gpt-manuscript","owner":"greenelab","isFork":false,"description":"Manuscript describing software for the automated revision of manubot manuscripts.","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"TeX","color":"#3D6117"},"pullRequestCount":2,"issueCount":2,"starsCount":16,"forksCount":3,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-28T17:26:03.034Z"}},{"type":"Public","name":"nature_news_manuscript","owner":"greenelab","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":2,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-15T19:56:35.480Z"}},{"type":"Public","name":"nature_news_disparities","owner":"greenelab","isFork":false,"description":"Analysis pipeline for Nature news articles","topicNames":["analysis"],"topicsNotShown":0,"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":5,"starsCount":4,"forksCount":1,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-12T19:47:19.802Z"}},{"type":"Public","name":"xswap-manuscript","owner":"greenelab","isFork":false,"description":"Manuscript on XSwap network permutation and hetnet node degrees","topicNames":["networks","permutation","hetnets","xswap","manuscript","manubot"],"topicsNotShown":0,"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":3,"forksCount":5,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-10T18:05:10.255Z"}},{"type":"Public","name":"ccc-manuscript","owner":"greenelab","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":4,"issueCount":0,"starsCount":1,"forksCount":2,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-08T08:42:53.104Z"}},{"type":"Public","name":"covid19-review","owner":"greenelab","isFork":false,"description":"A collaborative review of the emerging COVID-19 literature. Join the chat here: ","topicNames":["review","immunology","hacktoberfest","covid-19","sars-cov-2","virus","manuscript","manubot"],"topicsNotShown":0,"primaryLanguage":{"name":"TeX","color":"#3D6117"},"pullRequestCount":3,"issueCount":353,"starsCount":116,"forksCount":82,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-02T23:10:16.381Z"}},{"type":"Public","name":"xswap-analysis","owner":"greenelab","isFork":false,"description":"Analysis and experiments for https://github.com/greenelab/xswap-manuscript","topicNames":["tool","software","networks","permutation","notebooks","degree","hetnets","xswap","edge-prior"],"topicsNotShown":0,"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":1,"starsCount":3,"forksCount":1,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-12-29T16:53:54.531Z"}},{"type":"Public","name":"generalization-manuscript","owner":"greenelab","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":"Creative Commons Attribution 4.0 International","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-12-20T02:44:51.718Z"}},{"type":"Public","name":"optimizer-manuscript","owner":"greenelab","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":"Creative Commons Attribution 4.0 International","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-11-12T18:23:26.084Z"}},{"type":"Public","name":"hgsc_rnaseq_cluster","owner":"greenelab","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":1,"starsCount":0,"forksCount":0,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-11-01T20:53:16.388Z"}},{"type":"Public","name":"hgsc_rnaseq_clustering_pipeline","owner":"greenelab","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-11-01T18:57:58.224Z"}},{"type":"Public","name":"phenoplier_manuscript","owner":"greenelab","isFork":false,"description":"PhenoPLIER manuscript","topicNames":["manuscript","unsupervised-learning","complex-traits","manubot","gene-modules"],"topicsNotShown":0,"primaryLanguage":{"name":"TeX","color":"#3D6117"},"pullRequestCount":3,"issueCount":1,"starsCount":1,"forksCount":3,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-09-25T17:31:49.237Z"}},{"type":"Public","name":"jake_dissertation","owner":"greenelab","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":"Creative Commons Attribution 4.0 International","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-09-15T14:35:06.552Z"}},{"type":"Public","name":"deconvolution_pilot","owner":"greenelab","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":1,"starsCount":2,"forksCount":1,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-09-11T00:30:49.211Z"}},{"type":"Public","name":"backup","owner":"greenelab","isFork":false,"description":"Backup a GitHub user's or organization's repos and wikis","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"TypeScript","color":"#3178c6"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-08-21T20:55:34.235Z"}},{"type":"Public","name":"pancancer-evaluation","owner":"greenelab","isFork":false,"description":"Evaluating genome-wide prediction of driver mutations using pan-cancer data","topicNames":["classifier","machine-learning","genome","cancer","pancancer","analysis","gene-expression"],"topicsNotShown":0,"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":17,"starsCount":9,"forksCount":3,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-08-15T18:51:41.258Z"}},{"type":"Public","name":"pubtator","owner":"greenelab","isFork":false,"description":"Retrieve and process PubTator annotations","topicNames":["nlp","data","text-mining","tool","pubmed","snorkel","pubtator"],"topicsNotShown":0,"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":2,"issueCount":5,"starsCount":40,"forksCount":9,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-08-10T14:33:37.199Z"}}],"repositoryCount":165,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"mirror","text":"Mirrors"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"Repositories"}