{"payload":{"pageCount":3,"repositories":[{"type":"Public","name":"SVP","owner":"YuLab-SMU","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":4,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-28T10:28:44.855Z"}},{"type":"Public","name":"ggtree","owner":"YuLab-SMU","isFork":false,"description":"🎄Visualization and annotation of phylogenetic trees","allTopics":["ggplot2","visualization","r","annotations","phylogenetic-trees"],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":149,"starsCount":809,"forksCount":169,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-28T09:47:46.558Z"}},{"type":"Public","name":"ggsc","owner":"YuLab-SMU","isFork":false,"description":"🧠 Visualizing Single Cell and Spatial Transcriptomics","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":32,"forksCount":4,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-28T07:23:45.197Z"}},{"type":"Public","name":"ggfun","owner":"YuLab-SMU","isFork":false,"description":"useful functions for ggplot","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":15,"forksCount":3,"license":null,"participation":[0,0,3,6,0,2,0,0,0,1,1,0,0,0,0,5,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,2,0,2,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-28T07:23:00.351Z"}},{"type":"Public","name":"yulab-smu.github.io","owner":"YuLab-SMU","isFork":false,"description":"🏠 Homepage for YuLab-SMU","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":12,"forksCount":4,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-23T15:46:51.449Z"}},{"type":"Public","name":"DOSE","owner":"YuLab-SMU","isFork":false,"description":"😷 Disease Ontology Semantic and Enrichment analysis","allTopics":["semantic-similarity","disease-ontology","enrichment-analysis"],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":2,"issueCount":22,"starsCount":105,"forksCount":34,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-16T10:13:57.861Z"}},{"type":"Public","name":"MicrobiomeProfiler","owner":"YuLab-SMU","isFork":false,"description":"🦠 A shiny package for microbiome functional enrichment analysis","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":1,"issueCount":0,"starsCount":33,"forksCount":7,"license":null,"participation":[0,0,0,0,0,4,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,0,2,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-15T01:42:04.046Z"}},{"type":"Public","name":"ReactomePA","owner":"YuLab-SMU","isFork":false,"description":"Reactome Pathway Analysis","allTopics":["enrichment-analysis","reactome-pathway-analysis","reactomepa"],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":17,"starsCount":36,"forksCount":10,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-15T01:40:56.851Z"}},{"type":"Public","name":"GOSemSim","owner":"YuLab-SMU","isFork":false,"description":"⛳ GO-terms Semantic Similarity Measures","allTopics":["gene-ontology","semantic-similarity","bioinformatics"],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":15,"starsCount":56,"forksCount":26,"license":null,"participation":[0,0,0,0,8,5,0,0,0,0,0,0,2,2,0,2,0,0,0,0,0,3,0,0,0,0,0,0,0,0,0,0,0,2,0,1,0,0,0,0,0,0,0,0,0,1,0,1,2,0,1,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-15T01:40:30.225Z"}},{"type":"Public","name":"clusterProfiler","owner":"YuLab-SMU","isFork":false,"description":"📊 A universal enrichment tool for interpreting omics data","allTopics":["visualization","go","rstats","kegg","enrichment-analysis","gsea"],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":3,"issueCount":293,"starsCount":953,"forksCount":247,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-15T01:40:07.220Z"}},{"type":"Public","name":"enrichplot","owner":"YuLab-SMU","isFork":false,"description":"Visualization of Functional Enrichment Result","allTopics":["pathway-analysis","enrichment-analysis","visualization"],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":111,"starsCount":219,"forksCount":62,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-15T01:39:52.919Z"}},{"type":"Public","name":"treeio","owner":"YuLab-SMU","isFork":false,"description":"🌱 Base Classes and Functions for Phylogenetic Tree Input and Output","allTopics":["parser","exporter","phylogenetic-trees"],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":1,"issueCount":23,"starsCount":93,"forksCount":23,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-15T01:39:30.132Z"}},{"type":"Public","name":"seqcombo","owner":"YuLab-SMU","isFork":false,"description":"Visualization tool for genetic reassortment","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":1,"starsCount":21,"forksCount":6,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-15T01:38:51.441Z"}},{"type":"Public","name":"meshes","owner":"YuLab-SMU","isFork":false,"description":"🩺 MeSH Enrichment and Semantic analyses","allTopics":["semantic-similarity","medical-subject-headings","enrichment-analysis"],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":1,"issueCount":1,"starsCount":9,"forksCount":4,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-15T01:38:07.736Z"}},{"type":"Public","name":"ggtreeSpace","owner":"YuLab-SMU","isFork":false,"description":"🕸️Exploring phylomorphospace using 'ggtree'","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":4,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-15T01:37:37.012Z"}},{"type":"Public","name":"ggtreeDendro","owner":"YuLab-SMU","isFork":false,"description":"Drawing 'dendrogram' using 'ggtree'","allTopics":["clustering","dendrogram"],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":10,"forksCount":3,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-15T01:37:00.279Z"}},{"type":"Public","name":"ChIPseeker","owner":"YuLab-SMU","isFork":false,"description":"🎯 ChIP peak Annotation, Comparison and Visualization","allTopics":["annotation","comparison","epigenetics","chip-seq","atac-seq","epigenomics","visualization"],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":1,"issueCount":98,"starsCount":210,"forksCount":74,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-15T01:35:36.994Z"}},{"type":"Public","name":"ggtreeExtra","owner":"YuLab-SMU","isFork":false,"description":"🍋 Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":11,"starsCount":83,"forksCount":15,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-14T10:06:19.733Z"}},{"type":"Public","name":"MicrobiotaProcess","owner":"YuLab-SMU","isFork":false,"description":"🦠 A comprehensive R package for deep mining microbiome","allTopics":["microbiome","microbiome-analysis","microbiome-data","rstats"],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":81,"starsCount":165,"forksCount":35,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-14T10:03:08.831Z"}},{"type":"Public","name":"tigeR","owner":"YuLab-SMU","isFork":false,"description":"🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":5,"forksCount":6,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-14T03:13:09.361Z"}},{"type":"Public","name":"clusterProfiler_protocol","owner":"YuLab-SMU","isFork":false,"description":"omics data analysis using clusterProfiler ;)","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":5,"forksCount":5,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-30T08:04:34.087Z"}},{"type":"Public","name":"fanyi","owner":"YuLab-SMU","isFork":false,"description":"Translate Words or Sentences via Online Translators","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":4,"starsCount":36,"forksCount":5,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-14T02:37:23.882Z"}},{"type":"Public","name":"tidytree","owner":"YuLab-SMU","isFork":false,"description":"🚿A Tidy Tool for Phylogenetic Tree Data Manipulation","allTopics":["tidyverse","tree-data","phylogenetic-tree","cran"],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":8,"starsCount":48,"forksCount":15,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-09T02:31:54.501Z"}},{"type":"Public","name":"shinyTempSignal","owner":"YuLab-SMU","isFork":false,"description":"Explore Temporal and Other Phylogenetic Signals","allTopics":["phylogenetics","shiny-app","molecular-clock"],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":9,"forksCount":6,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-06T10:08:43.322Z"}},{"type":"Public","name":"CellDiv","owner":"YuLab-SMU","isFork":false,"description":"Cell types Diversity","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-05T13:39:52.818Z"}},{"type":"Public","name":"simpleGO","owner":"YuLab-SMU","isFork":false,"description":"Simple GO Enrichment Analysis","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":4,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-12T13:10:22.632Z"}},{"type":"Public","name":"virus_plot","owner":"YuLab-SMU","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-09T02:57:16.260Z"}},{"type":"Public","name":"yulab.utils","owner":"YuLab-SMU","isFork":false,"description":"Miscellaneous functions commonly used by 'YuLab-SMU'.","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":29,"forksCount":10,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-05T17:19:35.807Z"}},{"type":"Public","name":"wikiprofiler","owner":"YuLab-SMU","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":3,"forksCount":4,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-05T17:15:38.105Z"}},{"type":"Public","name":"tidydr","owner":"YuLab-SMU","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":1,"starsCount":13,"forksCount":5,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-05T17:14:42.367Z"}}],"repositoryCount":85,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"Repositories"}