{"payload":{"pageCount":1,"repositories":[{"type":"Public","name":"LIMS2DB","owner":"SciLifeLab","isFork":true,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":12,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-24T13:51:22.014Z"}},{"type":"Public","name":"TACA","owner":"SciLifeLab","isFork":true,"description":"Tool for the Automation of Cleanup and Analyses: tools for projects and data management at NGI Stockholm","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":13,"starsCount":13,"forksCount":20,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-24T08:21:28.039Z"}},{"type":"Public","name":"scilifelab_epps","owner":"SciLifeLab","isFork":true,"description":"A collection of Genologics Clarity LIMS EPPs used at Scilifelab.","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":5,"forksCount":14,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-23T13:41:29.329Z"}},{"type":"Public","name":"standalone_scripts","owner":"SciLifeLab","isFork":false,"description":"Repository to store standalone scripts that do not belong to any bigger package or repository","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":3,"issueCount":0,"starsCount":4,"forksCount":23,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-02T12:41:19.918Z"}},{"type":"Public","name":"genologics_sql","owner":"SciLifeLab","isFork":true,"description":"Python interface for the Genologics Postgres database. ","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":9,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-05T14:47:58.014Z"}},{"type":"Public","name":"genologics","owner":"SciLifeLab","isFork":true,"description":"Python interface to the GenoLogics LIMS server via its REST API.","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":9,"starsCount":29,"forksCount":50,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-30T12:27:32.302Z"}},{"type":"Public","name":"taca-ngi-pipeline","owner":"SciLifeLab","isFork":true,"description":"A TACA plugin adding functionality relevant for the ngi_pipeline","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":2,"starsCount":3,"forksCount":13,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-29T12:12:11.679Z"}},{"type":"Public","name":"flowcell_parser","owner":"SciLifeLab","isFork":false,"description":"Collection of python scripts to parse Illumina (demux with bcl2fastq v2.17+) output","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":7,"forksCount":18,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-22T13:49:39.193Z"}},{"type":"Public","name":"OrderPortal","owner":"SciLifeLab","isFork":true,"description":"A portal for orders (a.k.a. requests, project applications) to a SciLifeLab facility from its users.","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":12,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-10-18T09:43:42.328Z"}},{"type":"Public","name":"standalone_scripts-1","owner":"SciLifeLab","isFork":true,"description":"Repository to store standalone scripts that do not belong to any bigger package or repository","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":23,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-06-20T10:51:25.342Z"}},{"type":"Public","name":"statusdb","owner":"SciLifeLab","isFork":false,"description":"Python wrappers and methods to work with CouchDB's instance at NGI Stockholm","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":0,"starsCount":2,"forksCount":9,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-26T12:05:33.353Z"}},{"type":"Public archive","name":"scilifelab","owner":"SciLifeLab","isFork":true,"description":"Misc code snippets for Science For Life Laboratory","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":10,"starsCount":5,"forksCount":25,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-01-30T14:37:22.061Z"}},{"type":"Public archive","name":"Sarek-data","owner":"SciLifeLab","isFork":true,"description":"Sarek test data and references","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":3,"forksCount":6,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2019-05-14T11:29:36.078Z"}},{"type":"Public","name":"SVDB","owner":"SciLifeLab","isFork":true,"description":"structural variant database software","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":16,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2019-03-15T17:08:12.070Z"}},{"type":"Public","name":"internal-provisioning","owner":"SciLifeLab","isFork":false,"description":"Ansible repository for deployment stuff","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":2,"starsCount":3,"forksCount":3,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-06-01T09:44:02.996Z"}},{"type":"Public","name":"NouGAT","owner":"SciLifeLab","isFork":true,"description":"NouGAT is a pipeline that automates de novo assembly project tasks, generating a first draft assembly.","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":3,"starsCount":5,"forksCount":16,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-04-10T14:01:44.762Z"}},{"type":"Public","name":"hugin","owner":"SciLifeLab","isFork":true,"description":"Status monitor","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":4,"starsCount":2,"forksCount":6,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2016-03-03T15:04:39.557Z"}},{"type":"Public","name":"scilifelab_parsers","owner":"SciLifeLab","isFork":false,"description":"Module for scilifelab parsers of metrics and other files","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2015-04-13T12:32:48.960Z"}},{"type":"Public","name":"bcbb","owner":"SciLifeLab","isFork":true,"description":"Useful bioinformatics code, primarily in Python and R","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":4,"starsCount":10,"forksCount":245,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2015-02-12T11:25:50.724Z"}},{"type":"Public","name":"bcbio-nextgen","owner":"SciLifeLab","isFork":true,"description":"Best-practice pipelines for fully automated high throughput sequencing analysis","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":4,"forksCount":357,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2014-12-04T13:00:30.363Z"}},{"type":"Public","name":"cloudbiolinux","owner":"SciLifeLab","isFork":true,"description":"CloudBioLinux: automating resource preparation for biological analysis","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":6,"starsCount":3,"forksCount":160,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2014-07-15T11:27:44.691Z"}},{"type":"Public archive","name":"miRNA_processing","owner":"SciLifeLab","isFork":true,"description":"Scripts to process miRNA from trimming through annotation.","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":0,"forksCount":4,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2014-06-18T09:46:55.731Z"}},{"type":"Public","name":"bcbio-nextgen-deploy","owner":"SciLifeLab","isFork":true,"description":"Suite of scripts to automatically deploy nextgen pipeline","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":3,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2013-12-17T12:26:10.000Z"}},{"type":"Public","name":"gapest","owner":"SciLifeLab","isFork":false,"description":"Reference implementation of the scaffolding gap size estimation algorithm by Kristoffer Sahlin","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":3,"forksCount":3,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2013-04-02T08:56:22.000Z"}},{"type":"Public","name":"ratatosk","owner":"SciLifeLab","isFork":true,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":6,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2013-03-25T13:43:25.000Z"}},{"type":"Public","name":"ratatosk.ext.scilife","owner":"SciLifeLab","isFork":false,"description":"Ratatosk extension for use at Science for Life Laboratory","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2013-03-24T21:23:05.000Z"}},{"type":"Public archive","name":"ngs.test.data","owner":"SciLifeLab","isFork":false,"description":"Test data set generation for ngs","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2013-03-17T11:21:25.000Z"}},{"type":"Public archive","name":"slog","owner":"SciLifeLab","isFork":false,"description":"simple lab logging system","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2011-04-12T10:31:51.000Z"}}],"repositoryCount":28,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"Repositories"}