{"payload":{"pageCount":1,"repositories":[{"type":"Public","name":"NextDenovo","owner":"Nextomics","isFork":false,"description":"Fast and accurate de novo assembler for long reads","topicNames":["assembler","pacbio","oxford-nanopore","genome-assembly","long-reads"],"topicsNotShown":0,"allTopics":["assembler","pacbio","oxford-nanopore","genome-assembly","long-reads"],"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":45,"starsCount":342,"forksCount":52,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-10T01:23:12.093Z"}},{"type":"Public","name":"nextsv","owner":"Nextomics","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":8,"starsCount":33,"forksCount":8,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-13T19:26:10.410Z"}},{"type":"Public","name":"NextPolish2","owner":"Nextomics","isFork":false,"description":"Repeat-aware polishing genomes assembled using HiFi long reads","topicNames":["genome-assembly","genome-polish","t2t-polish"],"topicsNotShown":0,"allTopics":["genome-assembly","genome-polish","t2t-polish"],"primaryLanguage":{"name":"Rust","color":"#dea584"},"pullRequestCount":0,"issueCount":1,"starsCount":49,"forksCount":0,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-01T09:06:17.839Z"}},{"type":"Public","name":"NextPolish","owner":"Nextomics","isFork":false,"description":" Fast and accurately polish the genome generated by long reads.","topicNames":["assembly","genome","polish"],"topicsNotShown":0,"allTopics":["assembly","genome","polish"],"primaryLanguage":null,"pullRequestCount":1,"issueCount":38,"starsCount":194,"forksCount":27,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-11-07T07:38:16.244Z"}},{"type":"Public","name":"GrandSTR","owner":"Nextomics","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":0,"starsCount":4,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-06-22T05:40:57.915Z"}},{"type":"Public","name":"GrandSV","owner":"Nextomics","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-06-01T06:06:24.122Z"}},{"type":"Public archive","name":"SCAN-seq","owner":"Nextomics","isFork":false,"description":"single cell amplification and sequencing of full-length RNAs by Nanopore platform","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":4,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-05-11T06:51:50.050Z"}},{"type":"Public","name":"Sniffles","owner":"Nextomics","isFork":true,"description":"Structural variation caller using third generation sequencing","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":87,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2019-04-26T07:51:31.997Z"}},{"type":"Public","name":"inScan","owner":"Nextomics","isFork":false,"description":"Region based insertion detection from long reads","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":3,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-06-21T02:16:03.917Z"}},{"type":"Public","name":"pipeline-for-isoseq","owner":"Nextomics","isFork":false,"description":"A pipeline for isoseq","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Perl","color":"#0298c3"},"pullRequestCount":0,"issueCount":1,"starsCount":22,"forksCount":12,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-06-08T01:35:55.404Z"}},{"type":"Public","name":"bio-playground","owner":"Nextomics","isFork":true,"description":"miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":104,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-05-16T01:13:55.850Z"}},{"type":"Public","name":"uniline","owner":"Nextomics","isFork":true,"description":"Assembly-based analysis","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Perl","color":"#0298c3"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":2,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2016-07-12T18:21:36.358Z"}},{"type":"Public","name":"ddRAD-pipeline","owner":"Nextomics","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Perl","color":"#0298c3"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":3,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2016-04-11T00:52:53.188Z"}}],"repositoryCount":13,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"Repositories"}