{"payload":{"pageCount":3,"repositories":[{"type":"Public","name":"mri-workshop-machine-learning","owner":"MontpellierRessourcesImagerie","isFork":false,"description":"The MRI machine learning workshop","topicNames":["machine-learning","deep-learning","convolutional-neural-networks","workshop-materials"],"topicsNotShown":0,"allTopics":["machine-learning","deep-learning","convolutional-neural-networks","workshop-materials"],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":3,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-23T15:41:02.691Z"}},{"type":"Public","name":"imagej_macros_and_scripts","owner":"MontpellierRessourcesImagerie","isFork":false,"description":"ImageJ macros and scripts written at the imaging facility MRI","topicNames":["imagej","fiji","imagej-plugins","jython","image-analysis-workflows","imagej-macro","bioimage-analysis","fiji-macro","toolsets","imagej-macro-scripts"],"topicsNotShown":1,"allTopics":["imagej","fiji","imagej-plugins","jython","image-analysis-workflows","imagej-macro","bioimage-analysis","fiji-macro","toolsets","imagej-macro-scripts","imagej-macros"],"primaryLanguage":{"name":"ImageJ Macro","color":"#99AAFF"},"pullRequestCount":0,"issueCount":4,"starsCount":27,"forksCount":14,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-21T13:17:56.924Z"}},{"type":"Public","name":"microscopemetrics-schema","owner":"MontpellierRessourcesImagerie","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":2,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-02T13:14:49.274Z"}},{"type":"Public","name":"meiosis_bar","owner":"MontpellierRessourcesImagerie","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"ImageJ Macro","color":"#99AAFF"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-26T07:16:44.758Z"}},{"type":"Public","name":"spots-to-membrane","owner":"MontpellierRessourcesImagerie","isFork":false,"description":"Segment cells in 3D from a membrane staining and process the distance between spots (from a CSV) and the membrane.","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-02T14:12:09.486Z"}},{"type":"Public","name":"microscopemetrics-dashboard","owner":"MontpellierRessourcesImagerie","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":2,"license":"GNU General Public License v2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-23T13:29:30.296Z"}},{"type":"Public","name":"microscope-metrics","owner":"MontpellierRessourcesImagerie","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":4,"issueCount":13,"starsCount":0,"forksCount":6,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-16T14:34:21.303Z"}},{"type":"Public","name":"microscopemetrics-omero","owner":"MontpellierRessourcesImagerie","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":2,"license":"GNU General Public License v2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-11T10:56:01.503Z"}},{"type":"Public","name":"psf-analysis","owner":"MontpellierRessourcesImagerie","isFork":false,"description":"Extract psfs and find aberrations like a tilt and a banana shape of the psf-core","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-12-22T17:19:51.717Z"}},{"type":"Public","name":"point-pattern-analysis","owner":"MontpellierRessourcesImagerie","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-11-14T18:15:22.282Z"}},{"type":"Public","name":"set-scale-tool","owner":"MontpellierRessourcesImagerie","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-11-03T17:39:06.128Z"}},{"type":"Public","name":"MetroloJ_QC","owner":"MontpellierRessourcesImagerie","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":0,"issueCount":1,"starsCount":12,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-10-11T17:19:01.842Z"}},{"type":"Public","name":"spots-in-yeasts","owner":"MontpellierRessourcesImagerie","isFork":false,"description":"Napari plugin producing a segmentation of yeast cells according to their transmission channel, and detecting YFP spots in the fluo channel.","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-08-30T13:09:51.009Z"}},{"type":"Public","name":"dl4mic","owner":"MontpellierRessourcesImagerie","isFork":false,"description":"Project to deploy the ZeroCostDL4Mic networks to the users of the facility. Run the training and application of the networks as python scripts.","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-07-19T09:03:13.838Z"}},{"type":"Public","name":"qupath_scripts","owner":"MontpellierRessourcesImagerie","isFork":false,"description":"General qupath scripts that are not project specific","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Groovy","color":"#4298b8"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-06-29T13:59:03.441Z"}},{"type":"Public","name":"ij-macro-programming-workshop","owner":"MontpellierRessourcesImagerie","isFork":false,"description":"The MRI workshop about ImageJ macro programming.","topicNames":["programming","imagej","macros","imagej-macro","fiji-macro","workshop","imagej-macro-programming","mri-workshop"],"topicsNotShown":0,"allTopics":["programming","imagej","macros","imagej-macro","fiji-macro","workshop","imagej-macro-programming","mri-workshop"],"primaryLanguage":{"name":"TeX","color":"#3D6117"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-05-22T15:39:29.413Z"}},{"type":"Public","name":"meiosis_bar_archive","owner":"MontpellierRessourcesImagerie","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"ImageJ Macro","color":"#99AAFF"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-04-21T10:11:06.728Z"}},{"type":"Public","name":"napari-bigfish","owner":"MontpellierRessourcesImagerie","isFork":false,"description":"A napari-plugin providing an alternative GUI for Big-FISH. Big-FISH is a python package for the analysis of smFISH images","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":2,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-04-20T09:09:30.192Z"}},{"type":"Public","name":"napari-J","owner":"MontpellierRessourcesImagerie","isFork":false,"description":"Connect Napari with FIJI/ImageJ","topicNames":["imagej","fiji","image-analysis","bioimage-analysis","napari-plugin","python"],"topicsNotShown":0,"allTopics":["imagej","fiji","image-analysis","bioimage-analysis","napari-plugin","python"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":2,"forksCount":2,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-03-03T13:23:37.084Z"}},{"type":"Public","name":"rtd-tutorial","owner":"MontpellierRessourcesImagerie","isFork":false,"description":"readthedocs tutorial","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-01-13T12:44:25.899Z"}},{"type":"Public","name":"python_in_an_hour","owner":"MontpellierRessourcesImagerie","isFork":false,"description":"A short introduction to python as a supplement to the MRI Machine Learning workshop","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":"Creative Commons Zero v1.0 Universal","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-11-21T14:55:00.655Z"}},{"type":"Public","name":"matlab_scripts","owner":"MontpellierRessourcesImagerie","isFork":false,"description":"matlab scripts written at the MRI core imaging facility","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"MATLAB","color":"#e16737"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-10-28T13:44:28.935Z"}},{"type":"Public","name":"napari-surfaces","owner":"MontpellierRessourcesImagerie","isFork":false,"description":"Tools to work with iso-surfaces and meshes in napari","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-10-23T19:20:27.326Z"}},{"type":"Public","name":"presentations","owner":"MontpellierRessourcesImagerie","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-09-16T12:05:51.741Z"}},{"type":"Public","name":"current-napari-blob-detection","owner":"MontpellierRessourcesImagerie","isFork":true,"description":"A napari plugin for detecting blobs in images as points","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":3,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-06-17T15:19:45.581Z"}},{"type":"Public","name":"WF-NTPv2.0","owner":"MontpellierRessourcesImagerie","isFork":true,"description":"Wide field-nematode tracking platform","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"OpenEdge ABL","color":"#5ce600"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-06-17T14:59:40.748Z"}},{"type":"Public","name":"imagej_scripting_operations","owner":"MontpellierRessourcesImagerie","isFork":false,"description":"ImageJ scripting operations based on the imagej_scripting_framework","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-06-10T23:56:22.976Z"}},{"type":"Public","name":"imagej_scripting_framework","owner":"MontpellierRessourcesImagerie","isFork":false,"description":"A framework to write better image analysis scripts in ImageJ","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-06-10T23:55:38.840Z"}},{"type":"Public","name":"imagej_tools","owner":"MontpellierRessourcesImagerie","isFork":false,"description":"ImageJ bioimage analysis tools","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-06-07T16:28:39.635Z"}},{"type":"Public","name":"Neurite_Labelling_IJ_Plugin","owner":"MontpellierRessourcesImagerie","isFork":false,"description":"Label neurites with the label of the closest soma with respect to the distance along the paths on the neurites","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-05-24T21:51:47.390Z"}}],"repositoryCount":62,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"Repositories"}